Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_G11
(385 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQY1|ATG12_MOUSE Autophagy protein 12 (APG12-like) 110 1e-24
sp|O94817|ATG12_HUMAN Autophagy protein 12 (APG12-like) 110 1e-24
sp|Q5R7W1|ATG12_PONPY Autophagy protein 12 (APG12-like) 108 3e-24
sp|Q9VTU1|APG12_DROME Autophagy protein 12-like (APG12-like) 72 5e-13
sp|Q55S70|ATG12_CRYNE Autophagy-related protein 12 (Autopha... 61 7e-10
sp|Q9US24|ATG12_SCHPO Autophagy-related protein 12 (Autopha... 59 3e-09
sp|Q51P78|ATG12_MAGGR Autophagy-related protein 12 (Autopha... 59 3e-09
sp|Q6BZZ1|ATG12_YARLI Autophagy-related protein 12 (Autopha... 58 6e-09
sp|Q7S083|ATG12_NEUCR Autophagy-related protein 12 (Autopha... 57 1e-08
sp|Q5BCH0|ATG12_EMENI Autophagy-related protein 12 (Autopha... 54 1e-07
>sp|Q9CQY1|ATG12_MOUSE Autophagy protein 12 (APG12-like)
Length = 141
Score = 110 bits (274), Expect = 1e-24
Identities = 47/87 (54%), Positives = 65/87 (74%)
Frame = +1
Query: 97 KIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSLD 276
KID++LKA GD PI+K KKW VERT T+ +I F+K LK + E +F++ N SFAPS D
Sbjct: 55 KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPD 114
Query: 277 TDLGSLYDCYNVKGKLIVHYCKTPAWG 357
++G+LY+C+ GKL++HYCK+ AWG
Sbjct: 115 QEVGTLYECFGSDGKLVLHYCKSQAWG 141
>sp|O94817|ATG12_HUMAN Autophagy protein 12 (APG12-like)
Length = 140
Score = 110 bits (274), Expect = 1e-24
Identities = 47/87 (54%), Positives = 65/87 (74%)
Frame = +1
Query: 97 KIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSLD 276
KID++LKA GD PI+K KKW VERT T+ +I F+K LK + E +F++ N SFAPS D
Sbjct: 54 KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPD 113
Query: 277 TDLGSLYDCYNVKGKLIVHYCKTPAWG 357
++G+LY+C+ GKL++HYCK+ AWG
Sbjct: 114 QEVGTLYECFGSDGKLVLHYCKSQAWG 140
>sp|Q5R7W1|ATG12_PONPY Autophagy protein 12 (APG12-like)
Length = 140
Score = 108 bits (271), Expect = 3e-24
Identities = 47/87 (54%), Positives = 64/87 (73%)
Frame = +1
Query: 97 KIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSLD 276
KID++LKA GD PI+K KKW VERT T+ I F+K LK + E +F++ N SFAPS D
Sbjct: 54 KIDILLKAVGDTPIMKTKKWAVERTRTIQGPIDFIKKFLKLVASEQLFIYVNQSFAPSPD 113
Query: 277 TDLGSLYDCYNVKGKLIVHYCKTPAWG 357
++G+LY+C+ GKL++HYCK+ AWG
Sbjct: 114 QEVGTLYECFGSDGKLVLHYCKSQAWG 140
>sp|Q9VTU1|APG12_DROME Autophagy protein 12-like (APG12-like)
Length = 106
Score = 71.6 bits (174), Expect = 5e-13
Identities = 34/94 (36%), Positives = 55/94 (58%)
Frame = +1
Query: 76 TQGLKSDKIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNL 255
+Q L S + ++L A G+ PI+K++ W V+ TV + F+ LK + E I
Sbjct: 19 SQRLASLSVCILLNATGNVPIIKKRTWTVDPNKTVGWIQTFIHKFLKLDASEQI------ 72
Query: 256 SFAPSLDTDLGSLYDCYNVKGKLIVHYCKTPAWG 357
+FAP+ D + +LY+C+ GKL+++YCK AWG
Sbjct: 73 TFAPAPDQIIKNLYECHGTNGKLVLYYCKNQAWG 106
>sp|Q55S70|ATG12_CRYNE Autophagy-related protein 12 (Autophagy-related ubiquitin-like
modifier ATG12)
Length = 105
Score = 61.2 bits (147), Expect = 7e-10
Identities = 30/81 (37%), Positives = 45/81 (55%)
Frame = +1
Query: 115 KAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSLDTDLGSL 294
K+ G API+K + VI FL+ L ++++F + N +FAP+ D +GSL
Sbjct: 25 KSIGSAPIMKNNVFKATAGHKFQAVIMFLRQQLGMKKEDSLFTYINAAFAPAPDDTVGSL 84
Query: 295 YDCYNVKGKLIVHYCKTPAWG 357
Y + +G LIV+Y T AWG
Sbjct: 85 YKSFGTEGHLIVNYSNTQAWG 105
>sp|Q9US24|ATG12_SCHPO Autophagy-related protein 12 (Autophagy-related ubiquitin-like
modifier atg12)
Length = 132
Score = 59.3 bits (142), Expect = 3e-09
Identities = 32/102 (31%), Positives = 57/102 (55%)
Frame = +1
Query: 52 SNEAEINDTQGLKSDKIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDE 231
S E IN + ++ +++L KA G P+L++ + + + V +FLK L +
Sbjct: 31 SIETIINTYREKENRRVNLRFKAIGRTPLLRKTVFSINASQRFEKVTRFLKKELGLPMNS 90
Query: 232 NIFLFCNLSFAPSLDTDLGSLYDCYNVKGKLIVHYCKTPAWG 357
++ L+ N SFAPS D +G+LYD + + L+++YC A+G
Sbjct: 91 SLVLYVNSSFAPSPDEIVGNLYDNFAIDSHLLINYCINVAFG 132
>sp|Q51P78|ATG12_MAGGR Autophagy-related protein 12 (Autophagy-related ubiquitin-like
modifier ATG12)
Length = 181
Score = 58.9 bits (141), Expect = 3e-09
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +1
Query: 124 GDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSLDTDLGSLYDC 303
G AP L+++ + V+ +L+ LK G+ E++FL+ N +FAP+LD +G+L+ C
Sbjct: 103 GSAPALRKELCKISAAQRFEAVVAYLRRTLKVGNGESVFLYINSTFAPALDEIVGNLHRC 162
Query: 304 Y-NVKGKLIVHYCKTPAWG 357
+ + G+L V Y TPA+G
Sbjct: 163 FKDSNGQLNVSYSMTPAFG 181
>sp|Q6BZZ1|ATG12_YARLI Autophagy-related protein 12 (Autophagy-related ubiquitin-like
modifier ATG12)
Length = 205
Score = 58.2 bits (139), Expect = 6e-09
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Frame = +1
Query: 76 TQGLKSDKIDLILK---AAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLF 246
+Q L+ + LK G P LK+ + + T V++FL+ LK + ++ +F
Sbjct: 108 SQQLQQSNVKCQLKFRPIGGATPSLKQSVYKIAETQQFGVVVKFLRKQLKIKNSQSSQIF 167
Query: 247 CNLS-FAPSLDTDLGSLYDCYNVKGKLIVHYCKTPAWG 357
C +S FAP LD +GSLY+ Y ++G+L + YC A+G
Sbjct: 168 CYISSFAPGLDETVGSLYNRYAIRGELTISYCLNQAFG 205
>sp|Q7S083|ATG12_NEUCR Autophagy-related protein 12 (Autophagy-related ubiquitin-like
modifier atg-12)
Length = 157
Score = 57.0 bits (136), Expect = 1e-08
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +1
Query: 94 DKIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCNLSFAPSL 273
+K+ + K G AP L+R++ V T + V+ +L+ LK +++FL+ N FAP+L
Sbjct: 69 EKVVIRFKPVGSAPALRREQVKVLSTHSFETVVAYLRKTLKVQETDSVFLYVNSVFAPAL 128
Query: 274 DTDLGSLYDCY-NVKGKLIVHYCKTPAWG 357
D +G+L+ C+ + +L V Y TP++G
Sbjct: 129 DEVVGNLWRCFKDSTNQLNVSYSMTPSFG 157
>sp|Q5BCH0|ATG12_EMENI Autophagy-related protein 12 (Autophagy-related ubiquitin-like
modifier atg12)
Length = 163
Score = 53.5 bits (127), Expect = 1e-07
Identities = 28/95 (29%), Positives = 48/95 (50%)
Frame = +1
Query: 73 DTQGLKSDKIDLILKAAGDAPILKRKKWLVERTWTVSHVIQFLKGLLKCGSDENIFLFCN 252
D + + + K+ + + APILK + + + + V+ FL+ L C +++ + N
Sbjct: 72 DAEAIDTGKVTVRFQPLASAPILKNRVFKISASQKFETVVNFLRKKLNCKDTDSVICYVN 131
Query: 253 LSFAPSLDTDLGSLYDCYNVKGKLIVHYCKTPAWG 357
FAP LD +G L + +LIV Y TPA+G
Sbjct: 132 SVFAPRLDEGVGGL---WRTDDQLIVAYSMTPAFG 163
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,579,625
Number of Sequences: 369166
Number of extensions: 765520
Number of successful extensions: 1750
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1748
length of database: 68,354,980
effective HSP length: 94
effective length of database: 50,989,890
effective search space used: 1682666370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)