Planaria EST Database


DrC_01402

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01402
         (750 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P39793|PBPA_BACSU  Penicillin-binding protein 1A/1B (PBP1...    34   0.48 
sp|P46745|RT07_PROWI  Mitochondrial ribosomal protein S7           32   2.4  
sp|P03048|RP28_BPSP1  RNA polymerase sigma GP28 factor             31   4.1  
sp|Q80TT2|BAIP3_MOUSE  BAI1-associated protein 3 (BAP3)            30   5.3  
sp|Q8DQV2|IF2_STRR6  Translation initiation factor IF-2            30   6.9  
sp|Q97S57|IF2_STRPN  Translation initiation factor IF-2            30   6.9  
>sp|P39793|PBPA_BACSU Penicillin-binding protein 1A/1B (PBP1) [Includes:
            Penicillin-insensitive transglycosylase (Peptidoglycan
            TGase); Penicillin-sensitive transpeptidase
            (DD-transpeptidase)]
          Length = 914

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 23/82 (28%), Positives = 38/82 (46%)
 Frame = +1

Query: 355  YASNKQANEETVTDHLIIRPVKQTMDDKTKDDLINCLNKLGDGEIRNDLINFLNKPADRE 534
            Y   K  ++E   D       KQ  D+KT+DD     ++  DG+   D  +      D++
Sbjct: 787  YEVPKAEDDEDKKDQQQTDDEKQD-DEKTQDDTQTDDSQKDDGQTDQDQTDDSTNDQDKK 845

Query: 535  IRNVLINWSDSQKNDETNNDDN 600
              N   N SD+   D++N++DN
Sbjct: 846  QDNTNTNPSDNNNQDQSNDNDN 867
>sp|P46745|RT07_PROWI Mitochondrial ribosomal protein S7
          Length = 222

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 16/66 (24%), Positives = 32/66 (48%)
 Frame = +1

Query: 394 DHLIIRPVKQTMDDKTKDDLINCLNKLGDGEIRNDLINFLNKPADREIRNVLINWSDSQK 573
           D L++   K   ++  K+ L+  + +L       DL+N  NK ++     + I   D+ K
Sbjct: 48  DTLVLLKRKNLKENSKKESLLGIIGQLSPKNSIEDLVNNSNKLSNNSNEEIKIPLIDNSK 107

Query: 574 NDETNN 591
           +D+ +N
Sbjct: 108 SDDKSN 113
>sp|P03048|RP28_BPSP1 RNA polymerase sigma GP28 factor
          Length = 220

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 478 DGEIRNDLINFLNKPADREIRNVLINWSDSQKNDETNNDDNRPKSKTMEETGLDDLIIVP 657
           + +I   L+  L  P+D+ I NVLI+    +      +  N PK  T+    +D  + + 
Sbjct: 141 ESDIAKSLLEELINPSDQTIYNVLIDIERKKMLKSQGHRVNVPKDTTVRMKHIDQTLGIS 200

Query: 658 NEPVDLE 678
           N+  D E
Sbjct: 201 NKQYDSE 207
>sp|Q80TT2|BAIP3_MOUSE BAI1-associated protein 3 (BAP3)
          Length = 1134

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 112 GSFELLDVIYQDYRTLYDAYMKIFYERIINE 204
           G  EL D+IY+D +  Y  Y  +F+ ++  E
Sbjct: 559 GLVELADIIYEDLQLCYGVYASLFHRQVAEE 589
>sp|Q8DQV2|IF2_STRR6 Translation initiation factor IF-2
          Length = 930

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 409 RPVKQTMDDKTKDDLINCLNKLGDGEIRNDLINFLNKPADREIRNVL-INWSDSQKNDET 585
           R  KQ   DK +DD         D E         N+ +  ++RN    NW++++KN + 
Sbjct: 273 RRKKQARPDKNRDDY--------DHEEDGPRKQQKNRSSQNQVRNQKNSNWNNNKKNKKG 324

Query: 586 NNDDNR 603
           NN +NR
Sbjct: 325 NNKNNR 330
>sp|Q97S57|IF2_STRPN Translation initiation factor IF-2
          Length = 958

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 409 RPVKQTMDDKTKDDLINCLNKLGDGEIRNDLINFLNKPADREIRNVL-INWSDSQKNDET 585
           R  KQ   DK +DD         D E         N+ +  ++RN    NW++++KN + 
Sbjct: 301 RRKKQARPDKNRDDY--------DHEEDGPRKQQKNRSSQNQVRNQKNSNWNNNKKNKKG 352

Query: 586 NNDDNR 603
           NN +NR
Sbjct: 353 NNKNNR 358
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,703,907
Number of Sequences: 369166
Number of extensions: 1533901
Number of successful extensions: 3746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3734
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)