Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_G07
(750 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39793|PBPA_BACSU Penicillin-binding protein 1A/1B (PBP1... 34 0.48
sp|P46745|RT07_PROWI Mitochondrial ribosomal protein S7 32 2.4
sp|P03048|RP28_BPSP1 RNA polymerase sigma GP28 factor 31 4.1
sp|Q80TT2|BAIP3_MOUSE BAI1-associated protein 3 (BAP3) 30 5.3
sp|Q8DQV2|IF2_STRR6 Translation initiation factor IF-2 30 6.9
sp|Q97S57|IF2_STRPN Translation initiation factor IF-2 30 6.9
>sp|P39793|PBPA_BACSU Penicillin-binding protein 1A/1B (PBP1) [Includes:
Penicillin-insensitive transglycosylase (Peptidoglycan
TGase); Penicillin-sensitive transpeptidase
(DD-transpeptidase)]
Length = 914
Score = 33.9 bits (76), Expect = 0.48
Identities = 23/82 (28%), Positives = 38/82 (46%)
Frame = +1
Query: 355 YASNKQANEETVTDHLIIRPVKQTMDDKTKDDLINCLNKLGDGEIRNDLINFLNKPADRE 534
Y K ++E D KQ D+KT+DD ++ DG+ D + D++
Sbjct: 787 YEVPKAEDDEDKKDQQQTDDEKQD-DEKTQDDTQTDDSQKDDGQTDQDQTDDSTNDQDKK 845
Query: 535 IRNVLINWSDSQKNDETNNDDN 600
N N SD+ D++N++DN
Sbjct: 846 QDNTNTNPSDNNNQDQSNDNDN 867
>sp|P46745|RT07_PROWI Mitochondrial ribosomal protein S7
Length = 222
Score = 31.6 bits (70), Expect = 2.4
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +1
Query: 394 DHLIIRPVKQTMDDKTKDDLINCLNKLGDGEIRNDLINFLNKPADREIRNVLINWSDSQK 573
D L++ K ++ K+ L+ + +L DL+N NK ++ + I D+ K
Sbjct: 48 DTLVLLKRKNLKENSKKESLLGIIGQLSPKNSIEDLVNNSNKLSNNSNEEIKIPLIDNSK 107
Query: 574 NDETNN 591
+D+ +N
Sbjct: 108 SDDKSN 113
>sp|P03048|RP28_BPSP1 RNA polymerase sigma GP28 factor
Length = 220
Score = 30.8 bits (68), Expect = 4.1
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 478 DGEIRNDLINFLNKPADREIRNVLINWSDSQKNDETNNDDNRPKSKTMEETGLDDLIIVP 657
+ +I L+ L P+D+ I NVLI+ + + N PK T+ +D + +
Sbjct: 141 ESDIAKSLLEELINPSDQTIYNVLIDIERKKMLKSQGHRVNVPKDTTVRMKHIDQTLGIS 200
Query: 658 NEPVDLE 678
N+ D E
Sbjct: 201 NKQYDSE 207
>sp|Q80TT2|BAIP3_MOUSE BAI1-associated protein 3 (BAP3)
Length = 1134
Score = 30.4 bits (67), Expect = 5.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 112 GSFELLDVIYQDYRTLYDAYMKIFYERIINE 204
G EL D+IY+D + Y Y +F+ ++ E
Sbjct: 559 GLVELADIIYEDLQLCYGVYASLFHRQVAEE 589
>sp|Q8DQV2|IF2_STRR6 Translation initiation factor IF-2
Length = 930
Score = 30.0 bits (66), Expect = 6.9
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 409 RPVKQTMDDKTKDDLINCLNKLGDGEIRNDLINFLNKPADREIRNVL-INWSDSQKNDET 585
R KQ DK +DD D E N+ + ++RN NW++++KN +
Sbjct: 273 RRKKQARPDKNRDDY--------DHEEDGPRKQQKNRSSQNQVRNQKNSNWNNNKKNKKG 324
Query: 586 NNDDNR 603
NN +NR
Sbjct: 325 NNKNNR 330
>sp|Q97S57|IF2_STRPN Translation initiation factor IF-2
Length = 958
Score = 30.0 bits (66), Expect = 6.9
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 409 RPVKQTMDDKTKDDLINCLNKLGDGEIRNDLINFLNKPADREIRNVL-INWSDSQKNDET 585
R KQ DK +DD D E N+ + ++RN NW++++KN +
Sbjct: 301 RRKKQARPDKNRDDY--------DHEEDGPRKQQKNRSSQNQVRNQKNSNWNNNKKNKKG 352
Query: 586 NNDDNR 603
NN +NR
Sbjct: 353 NNKNNR 358
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,703,907
Number of Sequences: 369166
Number of extensions: 1533901
Number of successful extensions: 3746
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3734
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)