Planaria EST Database


DrC_01400

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01400
         (640 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5M8Y1|SPCS2_XENTR  Probable signal peptidase complex sub...   140   2e-33
sp|Q28250|SPCS2_CANFA  Signal peptidase complex subunit 2 (M...   139   8e-33
sp|Q15005|SPCS2_HUMAN  Signal peptidase complex subunit 2 (M...   139   8e-33
sp|Q5RAY6|SPCS2_PONPY  Signal peptidase complex subunit 2 (M...   139   8e-33
sp|Q9CYN2|SPCS2_MOUSE  Signal peptidase complex subunit 2 (M...   139   8e-33
sp|Q4R512|SPCS2_MACFA  Signal peptidase complex subunit 2 (M...   139   8e-33
sp|Q5BJI9|SPCS2_BRARE  Probable signal peptidase complex sub...   137   2e-32
sp|Q9VYY2|SPCS2_DROME  Probable signal peptidase complex sub...    93   5e-19
sp|Q615A2|SPCS2_CAEBR  Probable signal peptidase complex sub...    88   2e-17
sp|Q9XWW1|SPCS2_CAEEL  Probable signal peptidase complex sub...    87   3e-17
>sp|Q5M8Y1|SPCS2_XENTR Probable signal peptidase complex subunit 2 (Microsomal signal
           peptidase 25 kDa subunit) (SPase 25 kDa subunit)
          Length = 201

 Score =  140 bits (354), Expect = 2e-33
 Identities = 69/162 (42%), Positives = 101/162 (62%)
 Frame = +2

Query: 32  DTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYDWFYPFPASK 211
           D +A KN+LDD  KK+L E+Y++ E F LIDGRL+I T++ +   VA+++D+ +PFP SK
Sbjct: 27  DGSAVKNSLDDAAKKVLLEKYRYVENFCLIDGRLIICTISCVFAIVALVWDYLHPFPESK 86

Query: 212 LVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFPSKMKKYQDKYE 391
            VL +CV+ YF + G+LT Y  + E+S F +AH  D AG+D    W+  S +K++ DKY 
Sbjct: 87  PVLAICVISYFLMMGILTIYTSYKEKSIFLVAHRKDPAGMDPDDIWHLSSSLKRFDDKYT 146

Query: 392 LTIKREDLNAKQSHLMTESQSIAEFFDIKGNLRMDILEKYVT 517
           L +       K       ++SIA FFD  G L MD+ E  V+
Sbjct: 147 LKVTYISGKTKAQRDAEFTKSIARFFDDNGTLVMDLFEPEVS 188
>sp|Q28250|SPCS2_CANFA Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
           kDa subunit) (SPase 25 kDa subunit)
          Length = 226

 Score =  139 bits (349), Expect = 8e-33
 Identities = 69/162 (42%), Positives = 98/162 (60%)
 Frame = +2

Query: 32  DTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYDWFYPFPASK 211
           D +A KN+LDD  KK+L E+YK+ E F LIDGRL I T++     VA+++D+ +PFP SK
Sbjct: 52  DGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESK 111

Query: 212 LVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFPSKMKKYQDKYE 391
            VL +CV+ YF + G+LT Y  + E+S F +AH  D  G+D    W   S +K++ DKY 
Sbjct: 112 PVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYT 171

Query: 392 LTIKREDLNAKQSHLMTESQSIAEFFDIKGNLRMDILEKYVT 517
           L +       KQ      ++SIA+FFD  G L MD  E  ++
Sbjct: 172 LKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEIS 213
>sp|Q15005|SPCS2_HUMAN Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
           kDa subunit) (SPase 25 kDa subunit)
          Length = 226

 Score =  139 bits (349), Expect = 8e-33
 Identities = 69/162 (42%), Positives = 98/162 (60%)
 Frame = +2

Query: 32  DTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYDWFYPFPASK 211
           D +A KN+LDD  KK+L E+YK+ E F LIDGRL I T++     VA+++D+ +PFP SK
Sbjct: 52  DGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESK 111

Query: 212 LVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFPSKMKKYQDKYE 391
            VL +CV+ YF + G+LT Y  + E+S F +AH  D  G+D    W   S +K++ DKY 
Sbjct: 112 PVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYT 171

Query: 392 LTIKREDLNAKQSHLMTESQSIAEFFDIKGNLRMDILEKYVT 517
           L +       KQ      ++SIA+FFD  G L MD  E  ++
Sbjct: 172 LKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEIS 213
>sp|Q5RAY6|SPCS2_PONPY Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
           kDa subunit) (SPase 25 kDa subunit)
          Length = 226

 Score =  139 bits (349), Expect = 8e-33
 Identities = 69/162 (42%), Positives = 98/162 (60%)
 Frame = +2

Query: 32  DTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYDWFYPFPASK 211
           D +A KN+LDD  KK+L E+YK+ E F LIDGRL I T++     VA+++D+ +PFP SK
Sbjct: 52  DGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESK 111

Query: 212 LVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFPSKMKKYQDKYE 391
            VL +CV+ YF + G+LT Y  + E+S F +AH  D  G+D    W   S +K++ DKY 
Sbjct: 112 PVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYT 171

Query: 392 LTIKREDLNAKQSHLMTESQSIAEFFDIKGNLRMDILEKYVT 517
           L +       KQ      ++SIA+FFD  G L MD  E  ++
Sbjct: 172 LKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEIS 213
>sp|Q9CYN2|SPCS2_MOUSE Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
           kDa subunit) (SPase 25 kDa subunit)
          Length = 226

 Score =  139 bits (349), Expect = 8e-33
 Identities = 69/162 (42%), Positives = 98/162 (60%)
 Frame = +2

Query: 32  DTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYDWFYPFPASK 211
           D +A KN+LDD  KK+L E+YK+ E F LIDGRL I T++     VA+++D+ +PFP SK
Sbjct: 52  DGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESK 111

Query: 212 LVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFPSKMKKYQDKYE 391
            VL +CV+ YF + G+LT Y  + E+S F +AH  D  G+D    W   S +K++ DKY 
Sbjct: 112 PVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYT 171

Query: 392 LTIKREDLNAKQSHLMTESQSIAEFFDIKGNLRMDILEKYVT 517
           L +       KQ      ++SIA+FFD  G L MD  E  ++
Sbjct: 172 LKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEIS 213
>sp|Q4R512|SPCS2_MACFA Signal peptidase complex subunit 2 (Microsomal signal peptidase 25
           kDa subunit) (SPase 25 kDa subunit)
          Length = 226

 Score =  139 bits (349), Expect = 8e-33
 Identities = 69/162 (42%), Positives = 98/162 (60%)
 Frame = +2

Query: 32  DTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYDWFYPFPASK 211
           D +A KN+LDD  KK+L E+YK+ E F LIDGRL I T++     VA+++D+ +PFP SK
Sbjct: 52  DGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESK 111

Query: 212 LVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFPSKMKKYQDKYE 391
            VL +CV+ YF + G+LT Y  + E+S F +AH  D  G+D    W   S +K++ DKY 
Sbjct: 112 PVLALCVISYFVMMGILTIYTSYKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYT 171

Query: 392 LTIKREDLNAKQSHLMTESQSIAEFFDIKGNLRMDILEKYVT 517
           L +       KQ      ++SIA+FFD  G L MD  E  ++
Sbjct: 172 LKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEIS 213
>sp|Q5BJI9|SPCS2_BRARE Probable signal peptidase complex subunit 2 (Microsomal signal
           peptidase 25 kDa subunit) (SPase 25 kDa subunit)
          Length = 201

 Score =  137 bits (346), Expect = 2e-32
 Identities = 72/168 (42%), Positives = 102/168 (60%)
 Frame = +2

Query: 32  DTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYDWFYPFPASK 211
           D  A KN+LDD  KK+L E+Y + E F L+DGRL I TV+ L   VA+++D+ +PFP SK
Sbjct: 27  DGAAVKNSLDDAAKKVLIEKYGYLESFNLVDGRLFICTVSCLFTIVALIWDYLHPFPESK 86

Query: 212 LVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFPSKMKKYQDKYE 391
            VL  CV+ YF + G+LT Y  + E++ F +A + D AG+D    W   S +K++ D+Y 
Sbjct: 87  PVLACCVVSYFIMMGILTLYTSYKEKNIFLVAMQKDPAGMDPDHSWCLSSSLKRFDDQYT 146

Query: 392 LTIKREDLNAKQSHLMTESQSIAEFFDIKGNLRMDILEKYVTNPKTTL 535
           L +   D   KQS     ++S++ FFD  G L MD  EKYV+    TL
Sbjct: 147 LRMSFTDGKTKQSRETEFTKSVSVFFDENGTLVMDQYEKYVSKLHDTL 194
>sp|Q9VYY2|SPCS2_DROME Probable signal peptidase complex subunit 2 (Microsomal signal
           peptidase 25 kDa subunit) (SPase 25 kDa subunit)
          Length = 199

 Score = 93.2 bits (230), Expect = 5e-19
 Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
 Frame = +2

Query: 32  DTNATKNALDDGFKK-ILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYDWFYPFPAS 208
           D +A K+ALDD  K  +L ++ + +E+F L++ RL +  +AV    +A  +D+ +PFP S
Sbjct: 21  DGSAVKHALDDAVKTCLLGDRPQLKEQFGLVNTRLALCALAVSVAIMAHAWDFTHPFPES 80

Query: 209 KLVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFPSKMKKYQDKY 388
           + VL+  VL YFAL G+LT +  F E+ TF +A + D    ++   W   S M+KY DKY
Sbjct: 81  RPVLLFSVLAYFALLGILTLHSSFREKGTFAVALQKDK---ERERLWEASSDMRKYDDKY 137

Query: 389 ELTIKREDLNAKQSHLMTESQSIAEFFDIKG 481
            LT+   D    +    + ++S A F D  G
Sbjct: 138 LLTLSVRDTKNGKRREQSSNKSCAAFIDQNG 168
>sp|Q615A2|SPCS2_CAEBR Probable signal peptidase complex subunit 2 (Microsomal signal
           peptidase 25 kDa subunit) (SPase 25 kDa subunit)
          Length = 180

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 53/162 (32%), Positives = 93/162 (57%), Gaps = 1/162 (0%)
 Frame = +2

Query: 32  DTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYDWFYPFPASK 211
           D    KN LD+  KKIL ++  + E+  L++ RLLIS + V     A  YD++ PFP SK
Sbjct: 13  DGPTVKNGLDEVVKKILNDKVGWTEQHNLMNLRLLISFIGVAFSAFACGYDFYAPFPKSK 72

Query: 212 LVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFPSKMKKYQDKYE 391
           +VL+VC + YF   G+L  +  +VE+  F+ A+E D     +  KW + S++K + DKY 
Sbjct: 73  IVLLVCSVSYFICMGVLQLFQWYVEKDCFYEANEVDG---KQTRKWAWSSEIKAHDDKYV 129

Query: 392 LTIK-REDLNAKQSHLMTESQSIAEFFDIKGNLRMDILEKYV 514
           L+ + +++  + Q  ++   +SI  + D  G + + ++++ V
Sbjct: 130 LSAEFKKEGRSGQGKII---KSIGAYIDNDGEIMIPLVQREV 168
>sp|Q9XWW1|SPCS2_CAEEL Probable signal peptidase complex subunit 2 (Microsomal signal
           peptidase 25 kDa subunit) (SPase 25 kDa subunit)
          Length = 180

 Score = 87.4 bits (215), Expect = 3e-17
 Identities = 56/161 (34%), Positives = 86/161 (53%)
 Frame = +2

Query: 32  DTNATKNALDDGFKKILKEQYKFEEKFALIDGRLLISTVAVLCGGVAVLYDWFYPFPASK 211
           D    KNALD+  KKIL ++  + E   L++ RLLIS + V     A  YD++ PFP SK
Sbjct: 13  DGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACGYDYYEPFPKSK 72

Query: 212 LVLIVCVLLYFALTGLLTCYIMFVERSTFFLAHENDTAGLDKPIKWNFPSKMKKYQDKYE 391
           +VL VC + YF   G+L  Y  +VE+   + A E D     +  KW + S++K + DKY 
Sbjct: 73  IVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDG---KQSRKWAWSSEIKAHDDKY- 128

Query: 392 LTIKREDLNAKQSHLMTESQSIAEFFDIKGNLRMDILEKYV 514
            T+  E     +S     ++SI  + D  G + + +++K V
Sbjct: 129 -TLSAEFKKEGRSGQGKITKSIGAYIDNDGEIIVPLVKKEV 168
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,114,275
Number of Sequences: 369166
Number of extensions: 1224412
Number of successful extensions: 3740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3732
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)