Planaria EST Database


DrC_01399

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01399
         (423 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O55234|PSB5_MOUSE  Proteasome subunit beta type 5 precurs...   210   1e-54
sp|P28074|PSB5_HUMAN  Proteasome subunit beta type 5 precurs...   208   4e-54
sp|P28075|PSB5_RAT  Proteasome subunit beta type 5 precursor...   207   6e-54
sp|P28064|PSB8_RAT  Proteasome subunit beta type 8 precursor...   202   2e-52
sp|P28063|PSB8_MOUSE  Proteasome subunit beta type 8 precurs...   201   7e-52
sp|P28062|PSB8_HUMAN  Proteasome subunit beta type 8 precurs...   200   9e-52
sp|P34065|PSB5_CHICK  Proteasome subunit beta type 5 precurs...   199   2e-51
sp|Q5W416|PSB8_CANFA  Proteasome subunit beta type 8 precurs...   196   1e-50
sp|O23717|PSB5A_ARATH  Proteasome subunit beta type 5-A prec...   194   8e-50
sp|Q9LIP2|PSB5B_ARATH  Proteasome subunit beta type 5-B prec...   192   2e-49
>sp|O55234|PSB5_MOUSE Proteasome subunit beta type 5 precursor (Proteasome epsilon chain)
           (Macropain epsilon chain) (Multicatalytic endopeptidase
           complex epsilon chain) (Proteasome subunit X)
           (Proteasome chain 6)
          Length = 209

 Score =  210 bits (534), Expect = 1e-54
 Identities = 101/140 (72%), Positives = 115/140 (82%)
 Frame = +2

Query: 2   SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
           + DSRA+ G+YIASQTVKKVIEI PYLLGTMAGGAADC FW R+LA+ CR+YELR+KER+
Sbjct: 19  AADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERI 78

Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
           SVAAASKLL NM+ QYKG  LSMGTMI G+DK GPGLYYVD EG R+ G  FS GSGS Y
Sbjct: 79  SVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVY 138

Query: 362 AYGVLDSNYKHDTSDEEAYN 421
           AYGV+D  Y +D   EEAY+
Sbjct: 139 AYGVMDRGYSYDLKVEEAYD 158
>sp|P28074|PSB5_HUMAN Proteasome subunit beta type 5 precursor (Proteasome epsilon chain)
           (Macropain epsilon chain) (Multicatalytic endopeptidase
           complex epsilon chain) (Proteasome subunit X)
           (Proteasome chain 6) (Proteasome subunit MB1)
          Length = 208

 Score =  208 bits (529), Expect = 4e-54
 Identities = 100/140 (71%), Positives = 115/140 (82%)
 Frame = +2

Query: 2   SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
           + DSRA+ G+YIASQTVKKVIEI PYLLGTMAGGAADC FW R+LA+ CR+YELR+KER+
Sbjct: 19  AADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERI 78

Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
           SVAAASKLL NM+ QYKG  LSMGTMI G+DK GPGLYYVD EG R+ G  FS GSGS Y
Sbjct: 79  SVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVY 138

Query: 362 AYGVLDSNYKHDTSDEEAYN 421
           AYGV+D  Y +D   E+AY+
Sbjct: 139 AYGVMDRGYSYDLEVEQAYD 158
>sp|P28075|PSB5_RAT Proteasome subunit beta type 5 precursor (Proteasome epsilon chain)
           (Macropain epsilon chain) (Multicatalytic endopeptidase
           complex epsilon chain) (Proteasome subunit X)
           (Proteasome chain 6)
          Length = 208

 Score =  207 bits (528), Expect = 6e-54
 Identities = 100/140 (71%), Positives = 114/140 (81%)
 Frame = +2

Query: 2   SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
           + DSRA+ G YIASQTVKKVIEI PYLLGTMAGGAADC FW R+LA+ CR+YELR+KER+
Sbjct: 19  AADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERI 78

Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
           SVAAASKLL NM+ QYKG  LSMGTMI G+DK GPGLYYVD EG R+ G  FS GSGS Y
Sbjct: 79  SVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVY 138

Query: 362 AYGVLDSNYKHDTSDEEAYN 421
           A+GV+D  Y +D   EEAY+
Sbjct: 139 AFGVMDRGYSYDLQVEEAYD 158
>sp|P28064|PSB8_RAT Proteasome subunit beta type 8 precursor (Proteasome component C13)
           (Macropain subunit C13) (Multicatalytic endopeptidase
           complex subunit C13)
          Length = 271

 Score =  202 bits (515), Expect = 2e-52
 Identities = 99/140 (70%), Positives = 115/140 (82%)
 Frame = +2

Query: 2   SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
           +VDSRAS GSYIA+  V KVIEI PYLLGTM+G AADC +W R+LAK CRLY LR+ ER+
Sbjct: 82  AVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERI 141

Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
           SV+AASKLL NM+ QY+G  LSMG+MI G+DK GPGLYYVDD GTRL G MFS GSG+TY
Sbjct: 142 SVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTY 201

Query: 362 AYGVLDSNYKHDTSDEEAYN 421
           AYGV+DS Y+ D S EEAY+
Sbjct: 202 AYGVMDSGYRQDLSPEEAYD 221
>sp|P28063|PSB8_MOUSE Proteasome subunit beta type 8 precursor (Proteasome component C13)
           (Macropain subunit C13) (Multicatalytic endopeptidase
           complex subunit C13)
          Length = 276

 Score =  201 bits (510), Expect = 7e-52
 Identities = 97/140 (69%), Positives = 115/140 (82%)
 Frame = +2

Query: 2   SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
           +VDSRA+ GSYI+S  + KVIEI PYLLGTM+G AADC +W R+LAK CRLY LR+ ER+
Sbjct: 87  AVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERI 146

Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
           SV+AASKLL NM+ QY+G  LSMG+MI G+DK GPGLYYVDD GTRL G MFS GSG+TY
Sbjct: 147 SVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTY 206

Query: 362 AYGVLDSNYKHDTSDEEAYN 421
           AYGV+DS Y+ D S EEAY+
Sbjct: 207 AYGVMDSGYRQDLSPEEAYD 226
>sp|P28062|PSB8_HUMAN Proteasome subunit beta type 8 precursor (Proteasome component C13)
           (Macropain subunit C13) (Multicatalytic endopeptidase
           complex subunit C13)
          Length = 276

 Score =  200 bits (509), Expect = 9e-52
 Identities = 97/140 (69%), Positives = 116/140 (82%)
 Frame = +2

Query: 2   SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
           +VDSRAS GSYI++  V KVIEI PYLLGTM+G AADC +W R+LAK CRLY LR+ ER+
Sbjct: 87  AVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERI 146

Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
           SV+AASKLL NM+ QY+G  LSMG+MI G+DK GPGLYYVD+ GTRL GNMFS GSG+TY
Sbjct: 147 SVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTY 206

Query: 362 AYGVLDSNYKHDTSDEEAYN 421
           AYGV+DS Y+ + S EEAY+
Sbjct: 207 AYGVMDSGYRPNLSPEEAYD 226
>sp|P34065|PSB5_CHICK Proteasome subunit beta type 5 precursor (Proteasome chain 1)
           (Macropain chain 1) (Multicatalytic endopeptidase
           complex chain 1) (Proteasome subunit C1)
          Length = 256

 Score =  199 bits (506), Expect = 2e-51
 Identities = 98/138 (71%), Positives = 114/138 (82%)
 Frame = +2

Query: 2   SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
           +VDSRA+ GSYIASQTV+KVIEI P LLGTMAGGAADC FW R+LA+ CR+YELR+KE +
Sbjct: 70  AVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPI 129

Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
           SVAAASKLL NM+ QYKG  LSMGTMI G+DK GPGLYYVD EGTR+ G  F+ GSGS+Y
Sbjct: 130 SVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGTRIPGEAFAVGSGSSY 189

Query: 362 AYGVLDSNYKHDTSDEEA 415
           AYGVLD   + D + +EA
Sbjct: 190 AYGVLDGGRRPDMATDEA 207
>sp|Q5W416|PSB8_CANFA Proteasome subunit beta type 8 precursor (Proteasome component C13)
           (Macropain subunit C13) (Multicatalytic endopeptidase
           complex subunit C13)
          Length = 276

 Score =  196 bits (499), Expect = 1e-50
 Identities = 96/139 (69%), Positives = 113/139 (81%)
 Frame = +2

Query: 2   SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
           +VDSRA+ G+YI+S  V KVIEI P LLGTM+G AADC +W R+LAK CRLY LR+ ER+
Sbjct: 87  AVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERI 146

Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
           SV+AASKLL NM+ QY+G +LSMG+MI G+DK GPGLYYVD  GTRL GNMFS GSGSTY
Sbjct: 147 SVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTY 206

Query: 362 AYGVLDSNYKHDTSDEEAY 418
           AYGV+DS Y+   S EEAY
Sbjct: 207 AYGVMDSGYQPSLSPEEAY 225
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type 5-A precursor (20S proteasome beta
           subunit E-1) (Proteasome epsilon-1 chain) (Proteasome
           component E)
          Length = 274

 Score =  194 bits (492), Expect = 8e-50
 Identities = 94/138 (68%), Positives = 112/138 (81%)
 Frame = +2

Query: 2   SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
           + DSRASMG YI+SQ+VKK+IEI PY+LGTMAGGAADC FW R L   CRL+EL +K R+
Sbjct: 72  AADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRI 131

Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
           SV+ ASKLL NM+  Y+G  LS+GTMI G+D+ GPGLYYVD+EG RL+G+ FS GSGS Y
Sbjct: 132 SVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPY 191

Query: 362 AYGVLDSNYKHDTSDEEA 415
           AYGVLDS YK+D S EEA
Sbjct: 192 AYGVLDSGYKYDMSVEEA 209
>sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type 5-B precursor (20S proteasome beta
           subunit E-2) (Proteasome epsilon-2 chain)
          Length = 273

 Score =  192 bits (489), Expect = 2e-49
 Identities = 94/138 (68%), Positives = 111/138 (80%)
 Frame = +2

Query: 2   SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
           + DSRASMG YI+SQ+VKK+IEI PY+LGTMAGGAADC FW R L   CRL+EL +K R+
Sbjct: 72  AADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRI 131

Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
           SV+ ASKLL NM+  Y+G  LS+GTMI G+D+ GPGLYYVD+EG RL+G+ FS GSGS Y
Sbjct: 132 SVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPY 191

Query: 362 AYGVLDSNYKHDTSDEEA 415
           AYGVLDS YK D S EEA
Sbjct: 192 AYGVLDSGYKFDMSVEEA 209
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,246,212
Number of Sequences: 369166
Number of extensions: 989221
Number of successful extensions: 2706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2671
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)