Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_F17
(423 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O55234|PSB5_MOUSE Proteasome subunit beta type 5 precurs... 210 1e-54
sp|P28074|PSB5_HUMAN Proteasome subunit beta type 5 precurs... 208 4e-54
sp|P28075|PSB5_RAT Proteasome subunit beta type 5 precursor... 207 6e-54
sp|P28064|PSB8_RAT Proteasome subunit beta type 8 precursor... 202 2e-52
sp|P28063|PSB8_MOUSE Proteasome subunit beta type 8 precurs... 201 7e-52
sp|P28062|PSB8_HUMAN Proteasome subunit beta type 8 precurs... 200 9e-52
sp|P34065|PSB5_CHICK Proteasome subunit beta type 5 precurs... 199 2e-51
sp|Q5W416|PSB8_CANFA Proteasome subunit beta type 8 precurs... 196 1e-50
sp|O23717|PSB5A_ARATH Proteasome subunit beta type 5-A prec... 194 8e-50
sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type 5-B prec... 192 2e-49
>sp|O55234|PSB5_MOUSE Proteasome subunit beta type 5 precursor (Proteasome epsilon chain)
(Macropain epsilon chain) (Multicatalytic endopeptidase
complex epsilon chain) (Proteasome subunit X)
(Proteasome chain 6)
Length = 209
Score = 210 bits (534), Expect = 1e-54
Identities = 101/140 (72%), Positives = 115/140 (82%)
Frame = +2
Query: 2 SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
+ DSRA+ G+YIASQTVKKVIEI PYLLGTMAGGAADC FW R+LA+ CR+YELR+KER+
Sbjct: 19 AADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERI 78
Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
SVAAASKLL NM+ QYKG LSMGTMI G+DK GPGLYYVD EG R+ G FS GSGS Y
Sbjct: 79 SVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVY 138
Query: 362 AYGVLDSNYKHDTSDEEAYN 421
AYGV+D Y +D EEAY+
Sbjct: 139 AYGVMDRGYSYDLKVEEAYD 158
>sp|P28074|PSB5_HUMAN Proteasome subunit beta type 5 precursor (Proteasome epsilon chain)
(Macropain epsilon chain) (Multicatalytic endopeptidase
complex epsilon chain) (Proteasome subunit X)
(Proteasome chain 6) (Proteasome subunit MB1)
Length = 208
Score = 208 bits (529), Expect = 4e-54
Identities = 100/140 (71%), Positives = 115/140 (82%)
Frame = +2
Query: 2 SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
+ DSRA+ G+YIASQTVKKVIEI PYLLGTMAGGAADC FW R+LA+ CR+YELR+KER+
Sbjct: 19 AADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERI 78
Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
SVAAASKLL NM+ QYKG LSMGTMI G+DK GPGLYYVD EG R+ G FS GSGS Y
Sbjct: 79 SVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVY 138
Query: 362 AYGVLDSNYKHDTSDEEAYN 421
AYGV+D Y +D E+AY+
Sbjct: 139 AYGVMDRGYSYDLEVEQAYD 158
>sp|P28075|PSB5_RAT Proteasome subunit beta type 5 precursor (Proteasome epsilon chain)
(Macropain epsilon chain) (Multicatalytic endopeptidase
complex epsilon chain) (Proteasome subunit X)
(Proteasome chain 6)
Length = 208
Score = 207 bits (528), Expect = 6e-54
Identities = 100/140 (71%), Positives = 114/140 (81%)
Frame = +2
Query: 2 SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
+ DSRA+ G YIASQTVKKVIEI PYLLGTMAGGAADC FW R+LA+ CR+YELR+KER+
Sbjct: 19 AADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERI 78
Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
SVAAASKLL NM+ QYKG LSMGTMI G+DK GPGLYYVD EG R+ G FS GSGS Y
Sbjct: 79 SVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVY 138
Query: 362 AYGVLDSNYKHDTSDEEAYN 421
A+GV+D Y +D EEAY+
Sbjct: 139 AFGVMDRGYSYDLQVEEAYD 158
>sp|P28064|PSB8_RAT Proteasome subunit beta type 8 precursor (Proteasome component C13)
(Macropain subunit C13) (Multicatalytic endopeptidase
complex subunit C13)
Length = 271
Score = 202 bits (515), Expect = 2e-52
Identities = 99/140 (70%), Positives = 115/140 (82%)
Frame = +2
Query: 2 SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
+VDSRAS GSYIA+ V KVIEI PYLLGTM+G AADC +W R+LAK CRLY LR+ ER+
Sbjct: 82 AVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERI 141
Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
SV+AASKLL NM+ QY+G LSMG+MI G+DK GPGLYYVDD GTRL G MFS GSG+TY
Sbjct: 142 SVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTY 201
Query: 362 AYGVLDSNYKHDTSDEEAYN 421
AYGV+DS Y+ D S EEAY+
Sbjct: 202 AYGVMDSGYRQDLSPEEAYD 221
>sp|P28063|PSB8_MOUSE Proteasome subunit beta type 8 precursor (Proteasome component C13)
(Macropain subunit C13) (Multicatalytic endopeptidase
complex subunit C13)
Length = 276
Score = 201 bits (510), Expect = 7e-52
Identities = 97/140 (69%), Positives = 115/140 (82%)
Frame = +2
Query: 2 SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
+VDSRA+ GSYI+S + KVIEI PYLLGTM+G AADC +W R+LAK CRLY LR+ ER+
Sbjct: 87 AVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERI 146
Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
SV+AASKLL NM+ QY+G LSMG+MI G+DK GPGLYYVDD GTRL G MFS GSG+TY
Sbjct: 147 SVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGNTY 206
Query: 362 AYGVLDSNYKHDTSDEEAYN 421
AYGV+DS Y+ D S EEAY+
Sbjct: 207 AYGVMDSGYRQDLSPEEAYD 226
>sp|P28062|PSB8_HUMAN Proteasome subunit beta type 8 precursor (Proteasome component C13)
(Macropain subunit C13) (Multicatalytic endopeptidase
complex subunit C13)
Length = 276
Score = 200 bits (509), Expect = 9e-52
Identities = 97/140 (69%), Positives = 116/140 (82%)
Frame = +2
Query: 2 SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
+VDSRAS GSYI++ V KVIEI PYLLGTM+G AADC +W R+LAK CRLY LR+ ER+
Sbjct: 87 AVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERI 146
Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
SV+AASKLL NM+ QY+G LSMG+MI G+DK GPGLYYVD+ GTRL GNMFS GSG+TY
Sbjct: 147 SVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDEHGTRLSGNMFSTGSGNTY 206
Query: 362 AYGVLDSNYKHDTSDEEAYN 421
AYGV+DS Y+ + S EEAY+
Sbjct: 207 AYGVMDSGYRPNLSPEEAYD 226
>sp|P34065|PSB5_CHICK Proteasome subunit beta type 5 precursor (Proteasome chain 1)
(Macropain chain 1) (Multicatalytic endopeptidase
complex chain 1) (Proteasome subunit C1)
Length = 256
Score = 199 bits (506), Expect = 2e-51
Identities = 98/138 (71%), Positives = 114/138 (82%)
Frame = +2
Query: 2 SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
+VDSRA+ GSYIASQTV+KVIEI P LLGTMAGGAADC FW R+LA+ CR+YELR+KE +
Sbjct: 70 AVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPI 129
Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
SVAAASKLL NM+ QYKG LSMGTMI G+DK GPGLYYVD EGTR+ G F+ GSGS+Y
Sbjct: 130 SVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGTRIPGEAFAVGSGSSY 189
Query: 362 AYGVLDSNYKHDTSDEEA 415
AYGVLD + D + +EA
Sbjct: 190 AYGVLDGGRRPDMATDEA 207
>sp|Q5W416|PSB8_CANFA Proteasome subunit beta type 8 precursor (Proteasome component C13)
(Macropain subunit C13) (Multicatalytic endopeptidase
complex subunit C13)
Length = 276
Score = 196 bits (499), Expect = 1e-50
Identities = 96/139 (69%), Positives = 113/139 (81%)
Frame = +2
Query: 2 SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
+VDSRA+ G+YI+S V KVIEI P LLGTM+G AADC +W R+LAK CRLY LR+ ER+
Sbjct: 87 AVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERI 146
Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
SV+AASKLL NM+ QY+G +LSMG+MI G+DK GPGLYYVD GTRL GNMFS GSGSTY
Sbjct: 147 SVSAASKLLSNMVYQYRGMDLSMGSMICGWDKKGPGLYYVDQNGTRLSGNMFSTGSGSTY 206
Query: 362 AYGVLDSNYKHDTSDEEAY 418
AYGV+DS Y+ S EEAY
Sbjct: 207 AYGVMDSGYQPSLSPEEAY 225
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type 5-A precursor (20S proteasome beta
subunit E-1) (Proteasome epsilon-1 chain) (Proteasome
component E)
Length = 274
Score = 194 bits (492), Expect = 8e-50
Identities = 94/138 (68%), Positives = 112/138 (81%)
Frame = +2
Query: 2 SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
+ DSRASMG YI+SQ+VKK+IEI PY+LGTMAGGAADC FW R L CRL+EL +K R+
Sbjct: 72 AADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRI 131
Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
SV+ ASKLL NM+ Y+G LS+GTMI G+D+ GPGLYYVD+EG RL+G+ FS GSGS Y
Sbjct: 132 SVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPY 191
Query: 362 AYGVLDSNYKHDTSDEEA 415
AYGVLDS YK+D S EEA
Sbjct: 192 AYGVLDSGYKYDMSVEEA 209
>sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type 5-B precursor (20S proteasome beta
subunit E-2) (Proteasome epsilon-2 chain)
Length = 273
Score = 192 bits (489), Expect = 2e-49
Identities = 94/138 (68%), Positives = 111/138 (80%)
Frame = +2
Query: 2 SVDSRASMGSYIASQTVKKVIEITPYLLGTMAGGAADCMFWLRVLAKHCRLYELRHKERM 181
+ DSRASMG YI+SQ+VKK+IEI PY+LGTMAGGAADC FW R L CRL+EL +K R+
Sbjct: 72 AADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRI 131
Query: 182 SVAAASKLLENMISQYKGYNLSMGTMIVGYDKMGPGLYYVDDEGTRLEGNMFSCGSGSTY 361
SV+ ASKLL NM+ Y+G LS+GTMI G+D+ GPGLYYVD+EG RL+G+ FS GSGS Y
Sbjct: 132 SVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPY 191
Query: 362 AYGVLDSNYKHDTSDEEA 415
AYGVLDS YK D S EEA
Sbjct: 192 AYGVLDSGYKFDMSVEEA 209
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,246,212
Number of Sequences: 369166
Number of extensions: 989221
Number of successful extensions: 2706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2671
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)