Planaria EST Database


DrC_01397

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01397
         (632 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91879|CKS2_XENLA  Cyclin-dependent kinases regulatory su...   117   2e-26
sp|P56390|CKS2_MOUSE  Cyclin-dependent kinases regulatory su...   117   3e-26
sp|P33552|CKS2_HUMAN  Cyclin-dependent kinases regulatory su...   117   3e-26
sp|Q24152|CKS1_DROME  Cyclin-dependent kinases regulatory su...   116   4e-26
sp|P61025|CKS1_MOUSE  Cyclin-dependent kinases regulatory su...   112   1e-24
sp|Q25330|CKS1_LEIME  Cyclin-dependent kinases regulatory su...   110   2e-24
sp|P41384|CKS1_PATVU  Cyclin-dependent kinases regulatory su...   108   9e-24
sp|P55933|CKS1_PHYPO  Probable cyclin-dependent kinases regu...   106   4e-23
sp|Q17868|CKS1_CAEEL  Cyclin-dependent kinases regulatory su...   104   2e-22
sp|P20486|CKS1_YEAST  Cyclin-dependent kinases regulatory su...    92   1e-18
>sp|Q91879|CKS2_XENLA Cyclin-dependent kinases regulatory subunit 2 (Xe-p9)
          Length = 79

 Score =  117 bits (293), Expect = 2e-26
 Identities = 49/72 (68%), Positives = 61/72 (84%)
 Frame = +3

Query: 54  MNIKSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIH 233
           M+ K+I+YSDKY D+ +EYRHV LP E+AK  PK  LM+EEEWRR+G++QS+GW HYMIH
Sbjct: 1   MSYKNIYYSDKYTDEHFEYRHVMLPKELAKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60

Query: 234 APEPHIILFRRP 269
            PEPHI+LFRRP
Sbjct: 61  EPEPHILLFRRP 72
>sp|P56390|CKS2_MOUSE Cyclin-dependent kinases regulatory subunit 2 (CKS-2)
          Length = 79

 Score =  117 bits (292), Expect = 3e-26
 Identities = 48/69 (69%), Positives = 59/69 (85%)
 Frame = +3

Query: 63  KSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPE 242
           K I+YSDKY+D+ YEYRHV LP E++K  PK  LM+EEEWRR+G++QS+GW HYMIH PE
Sbjct: 4   KQIYYSDKYFDEHYEYRHVMLpreLSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPE 63

Query: 243 PHIILFRRP 269
           PHI+LFRRP
Sbjct: 64  PHILLFRRP 72
>sp|P33552|CKS2_HUMAN Cyclin-dependent kinases regulatory subunit 2 (CKS-2)
          Length = 79

 Score =  117 bits (292), Expect = 3e-26
 Identities = 48/69 (69%), Positives = 59/69 (85%)
 Frame = +3

Query: 63  KSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPE 242
           K I+YSDKY+D+ YEYRHV LP E++K  PK  LM+EEEWRR+G++QS+GW HYMIH PE
Sbjct: 4   KQIYYSDKYFDEHYEYRHVMLpreLSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPE 63

Query: 243 PHIILFRRP 269
           PHI+LFRRP
Sbjct: 64  PHILLFRRP 72
>sp|Q24152|CKS1_DROME Cyclin-dependent kinases regulatory subunit
          Length = 74

 Score =  116 bits (291), Expect = 4e-26
 Identities = 48/70 (68%), Positives = 57/70 (81%)
 Frame = +3

Query: 63  KSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPE 242
           K I+YSDKYYD+ +EYRHV LP E+ K+ PK  LMTE EWR +G++QS GW HYMIH PE
Sbjct: 3   KDIYYSDKYYDEQFEYRHVVLPKELVKMVPKTHLMTEAEWRSIGVQQSRGWIHYMIHKPE 62

Query: 243 PHIILFRRPK 272
           PHI+LFRRPK
Sbjct: 63  PHILLFRRPK 72
>sp|P61025|CKS1_MOUSE Cyclin-dependent kinases regulatory subunit 1 (CKS-1) (Sid 1334)
 sp|P61024|CKS1_HUMAN Cyclin-dependent kinases regulatory subunit 1 (CKS-1)
          Length = 79

 Score =  112 bits (279), Expect = 1e-24
 Identities = 47/72 (65%), Positives = 58/72 (80%)
 Frame = +3

Query: 54  MNIKSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIH 233
           M+ K I+YSDKY D+ +EYRHV LP ++AKL PK  LM+E EWR +G++QS GW HYMIH
Sbjct: 1   MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query: 234 APEPHIILFRRP 269
            PEPHI+LFRRP
Sbjct: 61  EPEPHILLFRRP 72
>sp|Q25330|CKS1_LEIME Cyclin-dependent kinases regulatory subunit (P12LMMCKS1)
          Length = 99

 Score =  110 bits (276), Expect = 2e-24
 Identities = 43/68 (63%), Positives = 59/68 (86%)
 Frame = +3

Query: 69  IFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPEPH 248
           I YSDKYYDD++EYRHV LP ++A+L P ++LM+E EWR++G++QS GW HYMIH PEPH
Sbjct: 31  ILYSDKYYDDMFEYRHVILPKDLARLVPTSRLMSEMEWRQLGVQQSQGWVHYMIHKPEPH 90

Query: 249 IILFRRPK 272
           ++LF+RP+
Sbjct: 91  VLLFKRPR 98
>sp|P41384|CKS1_PATVU Cyclin-dependent kinases regulatory subunit (SUC1 homolog)
          Length = 76

 Score =  108 bits (271), Expect = 9e-24
 Identities = 44/71 (61%), Positives = 58/71 (81%)
 Frame = +3

Query: 54  MNIKSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIH 233
           M+ + I+YSDKY+D+ +EYRHV LP ++AK+ PKN LM+E EWR +G++QS GW HYM H
Sbjct: 1   MSARQIYYSDKYFDEDFEYRHVMLPKDIAKMVPKNHLMSEAEWRSIGVQQSHGWIHYMKH 60

Query: 234 APEPHIILFRR 266
            PEPHI+LFRR
Sbjct: 61  EPEPHILLFRR 71
>sp|P55933|CKS1_PHYPO Probable cyclin-dependent kinases regulatory subunit
          Length = 84

 Score =  106 bits (265), Expect = 4e-23
 Identities = 47/81 (58%), Positives = 62/81 (76%)
 Frame = +3

Query: 66  SIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPEP 245
           +I YS+KYYDD +EYRHV LPP++AK  PKN+L++E EWR +G++QS GW HY +H PEP
Sbjct: 5   TIQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEP 64

Query: 246 HIILFRRPKAVTEPPATTESH 308
           HI+LFRR   +   PA + SH
Sbjct: 65  HILLFRREVPM---PAASLSH 82
>sp|Q17868|CKS1_CAEEL Cyclin-dependent kinases regulatory subunit
          Length = 94

 Score =  104 bits (260), Expect = 2e-22
 Identities = 43/71 (60%), Positives = 58/71 (81%)
 Frame = +3

Query: 72  FYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPEPHI 251
           +YS+KY DD +EYRHV++  +++KL PKN+LM+E EWR +GI+QS GW HYMIH PE H+
Sbjct: 9   YYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHV 68

Query: 252 ILFRRPKAVTE 284
           +LFRRP A T+
Sbjct: 69  LLFRRPLAATQ 79
>sp|P20486|CKS1_YEAST Cyclin-dependent kinases regulatory subunit (Cell division control
           protein CKS1)
          Length = 150

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 42/77 (54%), Positives = 53/77 (68%), Gaps = 9/77 (11%)
 Frame = +3

Query: 66  SIFYSDKYYDDVYEYRHVYLPPEMAKLTPKN---------QLMTEEEWRRVGIEQSVGWT 218
           SI YS +Y DD YEYRHV LP  M K+ P +         +++TE+EWR +GI QS+GW 
Sbjct: 27  SIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWE 86

Query: 219 HYMIHAPEPHIILFRRP 269
           HY  HAPEPHI+LF+RP
Sbjct: 87  HYECHAPEPHILLFKRP 103
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,003,806
Number of Sequences: 369166
Number of extensions: 723143
Number of successful extensions: 1927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)