Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_F13
(632 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91879|CKS2_XENLA Cyclin-dependent kinases regulatory su... 117 2e-26
sp|P56390|CKS2_MOUSE Cyclin-dependent kinases regulatory su... 117 3e-26
sp|P33552|CKS2_HUMAN Cyclin-dependent kinases regulatory su... 117 3e-26
sp|Q24152|CKS1_DROME Cyclin-dependent kinases regulatory su... 116 4e-26
sp|P61025|CKS1_MOUSE Cyclin-dependent kinases regulatory su... 112 1e-24
sp|Q25330|CKS1_LEIME Cyclin-dependent kinases regulatory su... 110 2e-24
sp|P41384|CKS1_PATVU Cyclin-dependent kinases regulatory su... 108 9e-24
sp|P55933|CKS1_PHYPO Probable cyclin-dependent kinases regu... 106 4e-23
sp|Q17868|CKS1_CAEEL Cyclin-dependent kinases regulatory su... 104 2e-22
sp|P20486|CKS1_YEAST Cyclin-dependent kinases regulatory su... 92 1e-18
>sp|Q91879|CKS2_XENLA Cyclin-dependent kinases regulatory subunit 2 (Xe-p9)
Length = 79
Score = 117 bits (293), Expect = 2e-26
Identities = 49/72 (68%), Positives = 61/72 (84%)
Frame = +3
Query: 54 MNIKSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIH 233
M+ K+I+YSDKY D+ +EYRHV LP E+AK PK LM+EEEWRR+G++QS+GW HYMIH
Sbjct: 1 MSYKNIYYSDKYTDEHFEYRHVMLPKELAKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60
Query: 234 APEPHIILFRRP 269
PEPHI+LFRRP
Sbjct: 61 EPEPHILLFRRP 72
>sp|P56390|CKS2_MOUSE Cyclin-dependent kinases regulatory subunit 2 (CKS-2)
Length = 79
Score = 117 bits (292), Expect = 3e-26
Identities = 48/69 (69%), Positives = 59/69 (85%)
Frame = +3
Query: 63 KSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPE 242
K I+YSDKY+D+ YEYRHV LP E++K PK LM+EEEWRR+G++QS+GW HYMIH PE
Sbjct: 4 KQIYYSDKYFDEHYEYRHVMLpreLSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPE 63
Query: 243 PHIILFRRP 269
PHI+LFRRP
Sbjct: 64 PHILLFRRP 72
>sp|P33552|CKS2_HUMAN Cyclin-dependent kinases regulatory subunit 2 (CKS-2)
Length = 79
Score = 117 bits (292), Expect = 3e-26
Identities = 48/69 (69%), Positives = 59/69 (85%)
Frame = +3
Query: 63 KSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPE 242
K I+YSDKY+D+ YEYRHV LP E++K PK LM+EEEWRR+G++QS+GW HYMIH PE
Sbjct: 4 KQIYYSDKYFDEHYEYRHVMLpreLSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPE 63
Query: 243 PHIILFRRP 269
PHI+LFRRP
Sbjct: 64 PHILLFRRP 72
>sp|Q24152|CKS1_DROME Cyclin-dependent kinases regulatory subunit
Length = 74
Score = 116 bits (291), Expect = 4e-26
Identities = 48/70 (68%), Positives = 57/70 (81%)
Frame = +3
Query: 63 KSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPE 242
K I+YSDKYYD+ +EYRHV LP E+ K+ PK LMTE EWR +G++QS GW HYMIH PE
Sbjct: 3 KDIYYSDKYYDEQFEYRHVVLPKELVKMVPKTHLMTEAEWRSIGVQQSRGWIHYMIHKPE 62
Query: 243 PHIILFRRPK 272
PHI+LFRRPK
Sbjct: 63 PHILLFRRPK 72
>sp|P61025|CKS1_MOUSE Cyclin-dependent kinases regulatory subunit 1 (CKS-1) (Sid 1334)
sp|P61024|CKS1_HUMAN Cyclin-dependent kinases regulatory subunit 1 (CKS-1)
Length = 79
Score = 112 bits (279), Expect = 1e-24
Identities = 47/72 (65%), Positives = 58/72 (80%)
Frame = +3
Query: 54 MNIKSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIH 233
M+ K I+YSDKY D+ +EYRHV LP ++AKL PK LM+E EWR +G++QS GW HYMIH
Sbjct: 1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60
Query: 234 APEPHIILFRRP 269
PEPHI+LFRRP
Sbjct: 61 EPEPHILLFRRP 72
>sp|Q25330|CKS1_LEIME Cyclin-dependent kinases regulatory subunit (P12LMMCKS1)
Length = 99
Score = 110 bits (276), Expect = 2e-24
Identities = 43/68 (63%), Positives = 59/68 (86%)
Frame = +3
Query: 69 IFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPEPH 248
I YSDKYYDD++EYRHV LP ++A+L P ++LM+E EWR++G++QS GW HYMIH PEPH
Sbjct: 31 ILYSDKYYDDMFEYRHVILPKDLARLVPTSRLMSEMEWRQLGVQQSQGWVHYMIHKPEPH 90
Query: 249 IILFRRPK 272
++LF+RP+
Sbjct: 91 VLLFKRPR 98
>sp|P41384|CKS1_PATVU Cyclin-dependent kinases regulatory subunit (SUC1 homolog)
Length = 76
Score = 108 bits (271), Expect = 9e-24
Identities = 44/71 (61%), Positives = 58/71 (81%)
Frame = +3
Query: 54 MNIKSIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIH 233
M+ + I+YSDKY+D+ +EYRHV LP ++AK+ PKN LM+E EWR +G++QS GW HYM H
Sbjct: 1 MSARQIYYSDKYFDEDFEYRHVMLPKDIAKMVPKNHLMSEAEWRSIGVQQSHGWIHYMKH 60
Query: 234 APEPHIILFRR 266
PEPHI+LFRR
Sbjct: 61 EPEPHILLFRR 71
>sp|P55933|CKS1_PHYPO Probable cyclin-dependent kinases regulatory subunit
Length = 84
Score = 106 bits (265), Expect = 4e-23
Identities = 47/81 (58%), Positives = 62/81 (76%)
Frame = +3
Query: 66 SIFYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPEP 245
+I YS+KYYDD +EYRHV LPP++AK PKN+L++E EWR +G++QS GW HY +H PEP
Sbjct: 5 TIQYSEKYYDDKFEYRHVILPPDVAKEIPKNRLLSEGEWRGLGVQQSQGWVHYALHRPEP 64
Query: 246 HIILFRRPKAVTEPPATTESH 308
HI+LFRR + PA + SH
Sbjct: 65 HILLFRREVPM---PAASLSH 82
>sp|Q17868|CKS1_CAEEL Cyclin-dependent kinases regulatory subunit
Length = 94
Score = 104 bits (260), Expect = 2e-22
Identities = 43/71 (60%), Positives = 58/71 (81%)
Frame = +3
Query: 72 FYSDKYYDDVYEYRHVYLPPEMAKLTPKNQLMTEEEWRRVGIEQSVGWTHYMIHAPEPHI 251
+YS+KY DD +EYRHV++ +++KL PKN+LM+E EWR +GI+QS GW HYMIH PE H+
Sbjct: 9 YYSNKYEDDEFEYRHVHVTKDVSKLIPKNRLMSETEWRSLGIQQSPGWMHYMIHGPERHV 68
Query: 252 ILFRRPKAVTE 284
+LFRRP A T+
Sbjct: 69 LLFRRPLAATQ 79
>sp|P20486|CKS1_YEAST Cyclin-dependent kinases regulatory subunit (Cell division control
protein CKS1)
Length = 150
Score = 92.0 bits (227), Expect = 1e-18
Identities = 42/77 (54%), Positives = 53/77 (68%), Gaps = 9/77 (11%)
Frame = +3
Query: 66 SIFYSDKYYDDVYEYRHVYLPPEMAKLTPKN---------QLMTEEEWRRVGIEQSVGWT 218
SI YS +Y DD YEYRHV LP M K+ P + +++TE+EWR +GI QS+GW
Sbjct: 27 SIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWE 86
Query: 219 HYMIHAPEPHIILFRRP 269
HY HAPEPHI+LF+RP
Sbjct: 87 HYECHAPEPHILLFKRP 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,003,806
Number of Sequences: 369166
Number of extensions: 723143
Number of successful extensions: 1927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)