Planaria EST Database


DrC_01392

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01392
         (122 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P84090|ERH_HUMAN  Enhancer of rudimentary homolog >gi|513...    41   0.001
sp|Q98874|ERH_BRARE  Enhancer of rudimentary homolog               41   0.001
sp|P80230|ERH_PIG  Enhancer of rudimentary homolog [Contains...    41   0.001
sp|P69099|ERH_ECHMU  Enhancer of rudimentary homolog >gi|597...    38   0.008
sp|Q24337|ER_DROME  Enhancer of rudimentary protein                36   0.032
sp|Q94554|ER_DROVI  Enhancer of rudimentary protein                35   0.054
sp|Q93104|ERH_AEDAE  Enhancer of rudimentary homolog               33   0.16 
>sp|P84090|ERH_HUMAN Enhancer of rudimentary homolog
 sp|P84089|ERH_MOUSE Enhancer of rudimentary homolog
          Length = 104

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 15/22 (68%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   YEPHSRDWIKEEIYLLLRKQAQ 68
           Y+P+++DWIKE+IY+LLR+QAQ
Sbjct: 79  YQPYNKDWIKEKIYVLLRRQAQ 100
>sp|Q98874|ERH_BRARE Enhancer of rudimentary homolog
          Length = 104

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 15/22 (68%), Positives = 22/22 (100%)
 Frame = +3

Query: 3   YEPHSRDWIKEEIYLLLRKQAQ 68
           Y+P+++DWIKE+IY+LLR+QAQ
Sbjct: 79  YQPYNKDWIKEKIYVLLRRQAQ 100
>sp|P80230|ERH_PIG Enhancer of rudimentary homolog [Contains: Antibacterial peptide
          3910]
          Length = 32

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 15/22 (68%), Positives = 22/22 (100%)
 Frame = +3

Query: 3  YEPHSRDWIKEEIYLLLRKQAQ 68
          Y+P+++DWIKE+IY+LLR+QAQ
Sbjct: 7  YQPYNKDWIKEKIYVLLRRQAQ 28
>sp|P69099|ERH_ECHMU Enhancer of rudimentary homolog
 sp|P69100|ERH_TAESO Enhancer of rudimentary homolog
          Length = 102

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +3

Query: 3   YEPHSRDWIKEEIYLLLRKQA 65
           Y PH++DWIKE IY LLR QA
Sbjct: 80  YVPHTKDWIKENIYALLRNQA 100
>sp|Q24337|ER_DROME Enhancer of rudimentary protein
          Length = 104

 Score = 35.8 bits (81), Expect = 0.032
 Identities = 14/24 (58%), Positives = 21/24 (87%)
 Frame = +3

Query: 3   YEPHSRDWIKEEIYLLLRKQAQAS 74
           Y P+++DWIKE+IY+LLR+ A +S
Sbjct: 79  YAPYNKDWIKEKIYVLLRQAAFSS 102
>sp|Q94554|ER_DROVI Enhancer of rudimentary protein
          Length = 104

 Score = 35.0 bits (79), Expect = 0.054
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = +3

Query: 3   YEPHSRDWIKEEIYLLLRKQA 65
           Y P+++DWIKE+IY+LLR+ A
Sbjct: 79  YAPYNKDWIKEKIYVLLRQAA 99
>sp|Q93104|ERH_AEDAE Enhancer of rudimentary homolog
          Length = 103

 Score = 33.5 bits (75), Expect = 0.16
 Identities = 12/21 (57%), Positives = 19/21 (90%)
 Frame = +3

Query: 3   YEPHSRDWIKEEIYLLLRKQA 65
           Y P++++WIKE+IY+LLR+ A
Sbjct: 79  YAPYNKEWIKEKIYVLLRQAA 99
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,499,090
Number of Sequences: 369166
Number of extensions: 103629
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 68,354,980
effective HSP length: 14
effective length of database: 65,768,690
effective search space used: 1709985940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)