Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_E22
(122 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P84090|ERH_HUMAN Enhancer of rudimentary homolog >gi|513... 41 0.001
sp|Q98874|ERH_BRARE Enhancer of rudimentary homolog 41 0.001
sp|P80230|ERH_PIG Enhancer of rudimentary homolog [Contains... 41 0.001
sp|P69099|ERH_ECHMU Enhancer of rudimentary homolog >gi|597... 38 0.008
sp|Q24337|ER_DROME Enhancer of rudimentary protein 36 0.032
sp|Q94554|ER_DROVI Enhancer of rudimentary protein 35 0.054
sp|Q93104|ERH_AEDAE Enhancer of rudimentary homolog 33 0.16
>sp|P84090|ERH_HUMAN Enhancer of rudimentary homolog
sp|P84089|ERH_MOUSE Enhancer of rudimentary homolog
Length = 104
Score = 40.8 bits (94), Expect = 0.001
Identities = 15/22 (68%), Positives = 22/22 (100%)
Frame = +3
Query: 3 YEPHSRDWIKEEIYLLLRKQAQ 68
Y+P+++DWIKE+IY+LLR+QAQ
Sbjct: 79 YQPYNKDWIKEKIYVLLRRQAQ 100
>sp|Q98874|ERH_BRARE Enhancer of rudimentary homolog
Length = 104
Score = 40.8 bits (94), Expect = 0.001
Identities = 15/22 (68%), Positives = 22/22 (100%)
Frame = +3
Query: 3 YEPHSRDWIKEEIYLLLRKQAQ 68
Y+P+++DWIKE+IY+LLR+QAQ
Sbjct: 79 YQPYNKDWIKEKIYVLLRRQAQ 100
>sp|P80230|ERH_PIG Enhancer of rudimentary homolog [Contains: Antibacterial peptide
3910]
Length = 32
Score = 40.8 bits (94), Expect = 0.001
Identities = 15/22 (68%), Positives = 22/22 (100%)
Frame = +3
Query: 3 YEPHSRDWIKEEIYLLLRKQAQ 68
Y+P+++DWIKE+IY+LLR+QAQ
Sbjct: 7 YQPYNKDWIKEKIYVLLRRQAQ 28
>sp|P69099|ERH_ECHMU Enhancer of rudimentary homolog
sp|P69100|ERH_TAESO Enhancer of rudimentary homolog
Length = 102
Score = 37.7 bits (86), Expect = 0.008
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3
Query: 3 YEPHSRDWIKEEIYLLLRKQA 65
Y PH++DWIKE IY LLR QA
Sbjct: 80 YVPHTKDWIKENIYALLRNQA 100
>sp|Q24337|ER_DROME Enhancer of rudimentary protein
Length = 104
Score = 35.8 bits (81), Expect = 0.032
Identities = 14/24 (58%), Positives = 21/24 (87%)
Frame = +3
Query: 3 YEPHSRDWIKEEIYLLLRKQAQAS 74
Y P+++DWIKE+IY+LLR+ A +S
Sbjct: 79 YAPYNKDWIKEKIYVLLRQAAFSS 102
>sp|Q94554|ER_DROVI Enhancer of rudimentary protein
Length = 104
Score = 35.0 bits (79), Expect = 0.054
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +3
Query: 3 YEPHSRDWIKEEIYLLLRKQA 65
Y P+++DWIKE+IY+LLR+ A
Sbjct: 79 YAPYNKDWIKEKIYVLLRQAA 99
>sp|Q93104|ERH_AEDAE Enhancer of rudimentary homolog
Length = 103
Score = 33.5 bits (75), Expect = 0.16
Identities = 12/21 (57%), Positives = 19/21 (90%)
Frame = +3
Query: 3 YEPHSRDWIKEEIYLLLRKQA 65
Y P++++WIKE+IY+LLR+ A
Sbjct: 79 YAPYNKEWIKEKIYVLLRQAA 99
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,499,090
Number of Sequences: 369166
Number of extensions: 103629
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 68,354,980
effective HSP length: 14
effective length of database: 65,768,690
effective search space used: 1709985940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)