Planaria EST Database


DrC_01389

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01389
         (885 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6HGI0|SERC_BACHK  Phosphoserine aminotransferase (PSAT)        35   0.28 
sp|Q638W1|SERC_BACCZ  Phosphoserine aminotransferase (PSAT)        34   0.47 
sp|Q734W9|SERC_BACC1  Phosphoserine aminotransferase (PSAT)        34   0.62 
sp|P48927|NU6M_PICCA  NADH-ubiquinone oxidoreductase chain 6...    33   0.81 
sp|Q81BC0|SERC_BACCR  Phosphoserine aminotransferase (PSAT)        31   5.2  
sp|Q58479|YA79_METJA  Hypothetical protein MJ1079                  30   8.9  
>sp|Q6HGI0|SERC_BACHK Phosphoserine aminotransferase (PSAT)
          Length = 360

 Score = 35.0 bits (79), Expect = 0.28
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +1

Query: 316 LFGGSTNICQTQLNNKTFIFKNNLTKLNPTFLIYITLI 429
           L GG+   C T LN +T+   N+L    P+F IY+T I
Sbjct: 212 LIGGADRYCPTMLNYETYSKNNSLYNTPPSFSIYVTKI 249
>sp|Q638W1|SERC_BACCZ Phosphoserine aminotransferase (PSAT)
          Length = 360

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 316 LFGGSTNICQTQLNNKTFIFKNNLTKLNPTFLIYIT 423
           L GG+   C T LN +T+   N+L    P+F IY+T
Sbjct: 212 LIGGADRYCPTMLNYETYSKNNSLYNTPPSFSIYVT 247
>sp|Q734W9|SERC_BACC1 Phosphoserine aminotransferase (PSAT)
          Length = 360

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 316 LFGGSTNICQTQLNNKTFIFKNNLTKLNPTFLIYIT 423
           L GG+   C T LN +T+   N+L    P+F IY+T
Sbjct: 212 LIGGADRSCPTMLNYETYSKNNSLYNTPPSFSIYVT 247
>sp|P48927|NU6M_PICCA NADH-ubiquinone oxidoreductase chain 6 (NADH dehydrogenase subunit
           6)
          Length = 207

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
 Frame = +1

Query: 127 LIINATYSIIILFG*MLSKCSK**TLGNAIPLKIFDNGISVFSLLELVIPVKKTQIYLL* 306
           L+ N  YSI+ L    ++           I + ++  GIS+ SLL +++ +    +  L 
Sbjct: 33  LVSNPMYSILYLIILFIN-----------IAIYLYLIGISIMSLLYILVYIGAIAVLFLF 81

Query: 307 IMLLFGG------STNICQTQLNNKTFIFKNNLTKLNPTFLIYITL 426
           I+ LF        S N+  T+LNN TF+ KNN     P F++ I +
Sbjct: 82  ILSLFTALPYLLESKNLKITELNN-TFLHKNNNI---PLFILIIII 123
>sp|Q81BC0|SERC_BACCR Phosphoserine aminotransferase (PSAT)
          Length = 360

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 316 LFGGSTNICQTQLNNKTFIFKNNLTKLNPTFLIYIT 423
           L G +   C T LN +T+   N+L    P+F IY+T
Sbjct: 212 LIGEADRSCPTMLNYETYSKNNSLYNTPPSFSIYVT 247
>sp|Q58479|YA79_METJA Hypothetical protein MJ1079
          Length = 397

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = -2

Query: 440 SLVRINVIYIKKVGFNLVKLFLKINVLLFSCV*HIFVLPPNNNIIYSK*ICVFFT----G 273
           +L +  +++I+KV F  + LF      +  C   + +   N  +IY   I V+ T    G
Sbjct: 317 NLSKYILLFIRKVNFKFLSLFF-----IIFCSLVVIIGSYNTYLIYH--IIVYLTAIYIG 369

Query: 272 ITSSKSENTEIPLSKIFNGIAFPNVYYF 189
           + + KS      LS + N + FP + YF
Sbjct: 370 LLAVKSNTN---LSNMMNVLIFPTILYF 394
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,878,487
Number of Sequences: 369166
Number of extensions: 1860997
Number of successful extensions: 3160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3160
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)