Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_E10
(885 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6HGI0|SERC_BACHK Phosphoserine aminotransferase (PSAT) 35 0.28
sp|Q638W1|SERC_BACCZ Phosphoserine aminotransferase (PSAT) 34 0.47
sp|Q734W9|SERC_BACC1 Phosphoserine aminotransferase (PSAT) 34 0.62
sp|P48927|NU6M_PICCA NADH-ubiquinone oxidoreductase chain 6... 33 0.81
sp|Q81BC0|SERC_BACCR Phosphoserine aminotransferase (PSAT) 31 5.2
sp|Q58479|YA79_METJA Hypothetical protein MJ1079 30 8.9
>sp|Q6HGI0|SERC_BACHK Phosphoserine aminotransferase (PSAT)
Length = 360
Score = 35.0 bits (79), Expect = 0.28
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 316 LFGGSTNICQTQLNNKTFIFKNNLTKLNPTFLIYITLI 429
L GG+ C T LN +T+ N+L P+F IY+T I
Sbjct: 212 LIGGADRYCPTMLNYETYSKNNSLYNTPPSFSIYVTKI 249
>sp|Q638W1|SERC_BACCZ Phosphoserine aminotransferase (PSAT)
Length = 360
Score = 34.3 bits (77), Expect = 0.47
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 316 LFGGSTNICQTQLNNKTFIFKNNLTKLNPTFLIYIT 423
L GG+ C T LN +T+ N+L P+F IY+T
Sbjct: 212 LIGGADRYCPTMLNYETYSKNNSLYNTPPSFSIYVT 247
>sp|Q734W9|SERC_BACC1 Phosphoserine aminotransferase (PSAT)
Length = 360
Score = 33.9 bits (76), Expect = 0.62
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 316 LFGGSTNICQTQLNNKTFIFKNNLTKLNPTFLIYIT 423
L GG+ C T LN +T+ N+L P+F IY+T
Sbjct: 212 LIGGADRSCPTMLNYETYSKNNSLYNTPPSFSIYVT 247
>sp|P48927|NU6M_PICCA NADH-ubiquinone oxidoreductase chain 6 (NADH dehydrogenase subunit
6)
Length = 207
Score = 33.5 bits (75), Expect = 0.81
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Frame = +1
Query: 127 LIINATYSIIILFG*MLSKCSK**TLGNAIPLKIFDNGISVFSLLELVIPVKKTQIYLL* 306
L+ N YSI+ L ++ I + ++ GIS+ SLL +++ + + L
Sbjct: 33 LVSNPMYSILYLIILFIN-----------IAIYLYLIGISIMSLLYILVYIGAIAVLFLF 81
Query: 307 IMLLFGG------STNICQTQLNNKTFIFKNNLTKLNPTFLIYITL 426
I+ LF S N+ T+LNN TF+ KNN P F++ I +
Sbjct: 82 ILSLFTALPYLLESKNLKITELNN-TFLHKNNNI---PLFILIIII 123
>sp|Q81BC0|SERC_BACCR Phosphoserine aminotransferase (PSAT)
Length = 360
Score = 30.8 bits (68), Expect = 5.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 316 LFGGSTNICQTQLNNKTFIFKNNLTKLNPTFLIYIT 423
L G + C T LN +T+ N+L P+F IY+T
Sbjct: 212 LIGEADRSCPTMLNYETYSKNNSLYNTPPSFSIYVT 247
>sp|Q58479|YA79_METJA Hypothetical protein MJ1079
Length = 397
Score = 30.0 bits (66), Expect = 8.9
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Frame = -2
Query: 440 SLVRINVIYIKKVGFNLVKLFLKINVLLFSCV*HIFVLPPNNNIIYSK*ICVFFT----G 273
+L + +++I+KV F + LF + C + + N +IY I V+ T G
Sbjct: 317 NLSKYILLFIRKVNFKFLSLFF-----IIFCSLVVIIGSYNTYLIYH--IIVYLTAIYIG 369
Query: 272 ITSSKSENTEIPLSKIFNGIAFPNVYYF 189
+ + KS LS + N + FP + YF
Sbjct: 370 LLAVKSNTN---LSNMMNVLIFPTILYF 394
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,878,487
Number of Sequences: 369166
Number of extensions: 1860997
Number of successful extensions: 3160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3160
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)