Planaria EST Database


DrC_01386

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01386
         (543 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18489|SYB_DROME  Synaptobrevin                                 78   2e-14
sp|P47193|VAMP2_XENLA  Vesicle-associated membrane protein 2...    74   2e-13
sp|P63026|VAMP2_BOVIN  Vesicle-associated membrane protein 2...    74   3e-13
sp|P63045|VAMP2_RAT  Vesicle-associated membrane protein 2 (...    74   3e-13
sp|P47194|SYB_LOLPE  Synaptobrevin                                 73   4e-13
sp|Q15836|VAM3_HUMAN  Vesicle-associated membrane protein 3 ...    72   9e-13
sp|P63025|VAMP3_RAT  Vesicle-associated membrane protein 3 (...    72   9e-13
sp|Q62442|VAMP1_MOUSE  Vesicle-associated membrane protein 1...    72   1e-12
sp|P23763|VAM1_HUMAN  Vesicle-associated membrane protein 1 ...    70   3e-12
sp|P13701|SYB_TORCA  Synaptobrevin (Synaptic vesicle-associa...    70   3e-12
>sp|P18489|SYB_DROME Synaptobrevin
          Length = 152

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 40/87 (45%), Positives = 55/87 (63%)
 Frame = +1

Query: 121 NQFNTYSQYHAVNVKGEDTQKTKLQKTQEEVDVVVQQMKENVHKVLIRDSKLHDLHIRAD 300
           N  + Y+Q+    ++  +  + KLQ+TQ +VD VV  M+ NV KVL RD KL +L  RAD
Sbjct: 25  NANDNYNQFGDHQIRNNNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERAD 84

Query: 301 ELTEGANQFXXXXRKVKRKFWWQNKKM 381
           +L +GA+QF     K+KRK WW N KM
Sbjct: 85  QLEQGASQFEQQAGKLKRKQWWANMKM 111
>sp|P47193|VAMP2_XENLA Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
           (SYBII)
          Length = 114

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 37/69 (53%), Positives = 47/69 (68%)
 Frame = +1

Query: 175 TQKTKLQKTQEEVDVVVQQMKENVHKVLIRDSKLHDLHIRADELTEGANQFXXXXRKVKR 354
           T   +LQ+TQ +VD VV  M+ NV KVL RD+KL +L  RAD L  GA+QF     K+KR
Sbjct: 25  TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDTKLSELDDRADALQAGASQFETSAAKLKR 84

Query: 355 KFWWQNKKM 381
           K+WW+N KM
Sbjct: 85  KYWWKNMKM 93
>sp|P63026|VAMP2_BOVIN Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
 sp|P63027|VAM2_HUMAN Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin 2)
          Length = 116

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 37/69 (53%), Positives = 46/69 (66%)
 Frame = +1

Query: 175 TQKTKLQKTQEEVDVVVQQMKENVHKVLIRDSKLHDLHIRADELTEGANQFXXXXRKVKR 354
           T   +LQ+TQ +VD VV  M+ NV KVL RD KL +L  RAD L  GA+QF     K+KR
Sbjct: 27  TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 86

Query: 355 KFWWQNKKM 381
           K+WW+N KM
Sbjct: 87  KYWWKNLKM 95
>sp|P63045|VAMP2_RAT Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
 sp|P63044|VAMP2_MOUSE Vesicle-associated membrane protein 2 (VAMP-2) (Synaptobrevin-2)
          Length = 116

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 37/69 (53%), Positives = 46/69 (66%)
 Frame = +1

Query: 175 TQKTKLQKTQEEVDVVVQQMKENVHKVLIRDSKLHDLHIRADELTEGANQFXXXXRKVKR 354
           T   +LQ+TQ +VD VV  M+ NV KVL RD KL +L  RAD L  GA+QF     K+KR
Sbjct: 27  TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR 86

Query: 355 KFWWQNKKM 381
           K+WW+N KM
Sbjct: 87  KYWWKNLKM 95
>sp|P47194|SYB_LOLPE Synaptobrevin
          Length = 125

 Score = 73.2 bits (178), Expect = 4e-13
 Identities = 37/68 (54%), Positives = 47/68 (69%)
 Frame = +1

Query: 178 QKTKLQKTQEEVDVVVQQMKENVHKVLIRDSKLHDLHIRADELTEGANQFXXXXRKVKRK 357
           Q  +LQ+TQ +V+ VV  M+ NV KVL RDSK+ +L  RAD L  GA+QF     K+KRK
Sbjct: 37  QSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 96

Query: 358 FWWQNKKM 381
           FWW+N KM
Sbjct: 97  FWWKNCKM 104
>sp|Q15836|VAM3_HUMAN Vesicle-associated membrane protein 3 (VAMP-3) (Synaptobrevin 3)
           (Cellubrevin) (CEB)
          Length = 100

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = +1

Query: 187 KLQKTQEEVDVVVQQMKENVHKVLIRDSKLHDLHIRADELTEGANQFXXXXRKVKRKFWW 366
           +LQ+TQ +VD VV  M+ NV KVL RD KL +L  RAD L  GA+QF     K+KRK+WW
Sbjct: 14  RLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 73

Query: 367 QNKKM 381
           +N KM
Sbjct: 74  KNCKM 78
>sp|P63025|VAMP3_RAT Vesicle-associated membrane protein 3 (VAMP-3) (Synaptobrevin-3)
           (Cellubrevin) (CEB)
 sp|P63024|VAMP3_MOUSE Vesicle-associated membrane protein 3 (VAMP-3) (Synaptobrevin-3)
           (Cellubrevin) (CEB)
          Length = 103

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 36/65 (55%), Positives = 45/65 (69%)
 Frame = +1

Query: 187 KLQKTQEEVDVVVQQMKENVHKVLIRDSKLHDLHIRADELTEGANQFXXXXRKVKRKFWW 366
           +LQ+TQ +VD VV  M+ NV KVL RD KL +L  RAD L  GA+QF     K+KRK+WW
Sbjct: 18  RLQQTQNQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 77

Query: 367 QNKKM 381
           +N KM
Sbjct: 78  KNCKM 82
>sp|Q62442|VAMP1_MOUSE Vesicle-associated membrane protein 1 (VAMP-1) (Synaptobrevin-1)
          Length = 118

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 36/69 (52%), Positives = 46/69 (66%)
 Frame = +1

Query: 175 TQKTKLQKTQEEVDVVVQQMKENVHKVLIRDSKLHDLHIRADELTEGANQFXXXXRKVKR 354
           T   +LQ+TQ +V+ VV  M+ NV KVL RD KL +L  RAD L  GA+QF     K+KR
Sbjct: 29  TSNRRLQQTQAQVEEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKR 88

Query: 355 KFWWQNKKM 381
           K+WW+N KM
Sbjct: 89  KYWWKNCKM 97
>sp|P23763|VAM1_HUMAN Vesicle-associated membrane protein 1 (VAMP-1) (Synaptobrevin 1)
          Length = 118

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 35/69 (50%), Positives = 46/69 (66%)
 Frame = +1

Query: 175 TQKTKLQKTQEEVDVVVQQMKENVHKVLIRDSKLHDLHIRADELTEGANQFXXXXRKVKR 354
           T   +LQ+TQ +V+ VV  ++ NV KVL RD KL +L  RAD L  GA+QF     K+KR
Sbjct: 29  TSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKR 88

Query: 355 KFWWQNKKM 381
           K+WW+N KM
Sbjct: 89  KYWWKNCKM 97
>sp|P13701|SYB_TORCA Synaptobrevin (Synaptic vesicle-associated integral membrane
           protein) (VAMP-1)
          Length = 120

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 35/69 (50%), Positives = 46/69 (66%)
 Frame = +1

Query: 175 TQKTKLQKTQEEVDVVVQQMKENVHKVLIRDSKLHDLHIRADELTEGANQFXXXXRKVKR 354
           T   +LQ+TQ +V+ VV  ++ NV KVL RD KL +L  RAD L  GA+QF     K+KR
Sbjct: 31  TSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKR 90

Query: 355 KFWWQNKKM 381
           K+WW+N KM
Sbjct: 91  KYWWKNCKM 99
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,451,516
Number of Sequences: 369166
Number of extensions: 665793
Number of successful extensions: 2982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2980
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3734833040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)