Planaria EST Database


DrC_01383

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01383
         (852 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZTX8|ARFF_ARATH  Auxin response factor 6                      32   2.9  
sp|P16076|MYODB_XENLA  Myoblast determination protein 1 homo...    30   8.5  
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6
          Length = 933

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
 Frame = +2

Query: 260 GRLTNLPPLAQR--RFPQSSGLNLLASVADSISHHDPNLPSV-------LHRVSNLRDIS 412
           G L +LPP+  R   FPQ     + AS    +  H PN PS+       LH V+   D+ 
Sbjct: 30  GPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNVTMHADV- 88

Query: 413 EGDPCSPQST 442
           E D    Q T
Sbjct: 89  ETDEVYAQMT 98
>sp|P16076|MYODB_XENLA Myoblast determination protein 1 homolog B (Myogenic factor 25)
          Length = 287

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 311 SGLNLLASVADSISHHDPNLPSVLHRVSNLRDISEGDPCSP 433
           S L+ L+S+ + IS   P+ P+ +   S     SEG PCSP
Sbjct: 216 SSLDCLSSIVERISTQSPSCPAPISVDSG----SEGSPCSP 252
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,962,547
Number of Sequences: 369166
Number of extensions: 1441471
Number of successful extensions: 3375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3373
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)