Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_C23
(852 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6 32 2.9
sp|P16076|MYODB_XENLA Myoblast determination protein 1 homo... 30 8.5
>sp|Q9ZTX8|ARFF_ARATH Auxin response factor 6
Length = 933
Score = 31.6 bits (70), Expect = 2.9
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Frame = +2
Query: 260 GRLTNLPPLAQR--RFPQSSGLNLLASVADSISHHDPNLPSV-------LHRVSNLRDIS 412
G L +LPP+ R FPQ + AS + H PN PS+ LH V+ D+
Sbjct: 30 GPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNVTMHADV- 88
Query: 413 EGDPCSPQST 442
E D Q T
Sbjct: 89 ETDEVYAQMT 98
>sp|P16076|MYODB_XENLA Myoblast determination protein 1 homolog B (Myogenic factor 25)
Length = 287
Score = 30.0 bits (66), Expect = 8.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 311 SGLNLLASVADSISHHDPNLPSVLHRVSNLRDISEGDPCSP 433
S L+ L+S+ + IS P+ P+ + S SEG PCSP
Sbjct: 216 SSLDCLSSIVERISTQSPSCPAPISVDSG----SEGSPCSP 252
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,962,547
Number of Sequences: 369166
Number of extensions: 1441471
Number of successful extensions: 3375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3373
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8390082510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)