Planaria EST Database


DrC_01367

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01367
         (804 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9U7E0|ATRX_CAEEL  Transcriptional regulator ATRX homolog...    45   2e-04
sp|O01761|UNC89_CAEEL  Muscle M-line assembly protein unc-89...    40   0.006
sp|Q14978|NOLC1_HUMAN  Nucleolar phosphoprotein p130 (Nucleo...    39   0.022
sp|P32257|GAL11_KLULA  Transcription regulatory protein GAL11      37   0.048
sp|P19246|NFH_MOUSE  Neurofilament triplet H protein (200 kD...    35   0.24 
sp|Q9NR30|DDX21_HUMAN  Nucleolar RNA helicase II (Nucleolar ...    34   0.41 
sp|Q95208|ICAL_SHEEP  Calpastatin (Calpain inhibitor)              34   0.41 
sp|P15205|MAP1B_RAT  Microtubule-associated protein 1B (MAP ...    34   0.53 
sp|P14873|MAP1B_MOUSE  Microtubule-associated protein 1B (MA...    34   0.53 
sp|Q9Y6V0|PCLO_HUMAN  Piccolo protein (Aczonin)                    33   0.70 
>sp|Q9U7E0|ATRX_CAEEL Transcriptional regulator ATRX homolog (X-linked nuclear protein 1)
          Length = 1359

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 1/187 (0%)
 Frame = +3

Query: 15  SKPKKQTKTQSFEEPSLEDQDPPPENIKKPKKQHSKASRPTEVLSDDGINPQPDYSKPLK 194
           +K K   K     E S ED+ P  ++ KK  K+ +K+   +E   +  +      SK + 
Sbjct: 171 NKEKSVKKRAETSEESDEDEKPSKKS-KKGLKKKAKSESESESEDEKEVKKSKKKSKKVV 229

Query: 195 KQPSRTRSKXXXXXXXXXXXYSKPLKKQNSKPSRSIEELSDGEN-PQPIYAXXXXXXXXX 371
           K+ S +  +            SK   +++S+  +S EE  + E+ P+P            
Sbjct: 230 KKESESEDEAPEKKKTEKRKRSKTSSEESSESEKSDEEEEEKESSPKP----KKKKPLAV 285

Query: 372 XXRPNDDLSDEGFVPTIPQVRLSAKVDSSLSFPDPPMDSSHSEELDPPPKASKKKGNHKP 551
               +D+ S+E  V  +PQ +    V       D     S SE  D   K SKKK   + 
Sbjct: 286 KKLSSDEESEESDVEVLPQKKKRGAVTLISDSEDEKDQKSESEASDVEEKVSKKKAKKQE 345

Query: 552 NPASSAN 572
           +  S ++
Sbjct: 346 SSESGSD 352

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 35/171 (20%), Positives = 55/171 (32%)
 Frame = +3

Query: 24  KKQTKTQSFEEPSLEDQDPPPENIKKPKKQHSKASRPTEVLSDDGINPQPDYSKPLKKQP 203
           KK+   +     S ED+D   E  +K KK+  K  + T   S +    +    K  K + 
Sbjct: 114 KKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKE 173

Query: 204 SRTRSKXXXXXXXXXXXYSKPLKKQNSKPSRSIEELSDGENPQPIYAXXXXXXXXXXXRP 383
              + +             KP KK      +  +  S+ E+                 + 
Sbjct: 174 KSVKKRAETSEESDED--EKPSKKSKKGLKKKAKSESESESEDEKEVKKSKKKSKKVVKK 231

Query: 384 NDDLSDEGFVPTIPQVRLSAKVDSSLSFPDPPMDSSHSEELDPPPKASKKK 536
             +  DE       + R  +K  S  S      D    EE +  PK  KKK
Sbjct: 232 ESESEDEAPEKKKTEKRKRSKTSSEESSESEKSD-EEEEEKESSPKPKKKK 281
>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 (Uncoordinated protein 89)
          Length = 8081

 Score = 40.4 bits (93), Expect = 0.006
 Identities = 45/194 (23%), Positives = 69/194 (35%), Gaps = 8/194 (4%)
 Frame = +3

Query: 18   KPKKQTKTQ-SFEEPSLEDQDPPPENIKKPKKQHSKASRPTEVLSDDGINPQPDYSKPLK 194
            KPK  TK + S E+ + ED   P +  K P+K   K + PT+  S        +   P K
Sbjct: 1630 KPKSPTKKEKSPEKSATEDVKSPTKKEKSPEKVEEKPTSPTKKESSPTKKTDDEVKSPTK 1689

Query: 195  KQ--PSRTRSKXXXXXXXXXXXYSKPLKKQNSKPSRSIEELSDGENPQPIYAXXXXXXXX 368
            K+  P     K            + P KK+ S     +EE+   +   P  A        
Sbjct: 1690 KEKSPQTVEEKP-----------ASPTKKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPT 1738

Query: 369  XXXR-PNDDLSDEGFVPT----IPQVRLSAKVDSSLSFPDPPMDSSHSEELDPPPKASKK 533
               + P    ++E   PT     P+     K  S       P+  +  +E+  P K  K 
Sbjct: 1739 KKEKSPEKSAAEEVKSPTKKEKSPEKSAEEKPKSPTKKESSPVKMA-DDEVKSPTKKEKS 1797

Query: 534  KGNHKPNPASSANR 575
                +  PAS   +
Sbjct: 1798 PEKVEEKPASPTKK 1811

 Score = 37.0 bits (84), Expect = 0.063
 Identities = 38/186 (20%), Positives = 65/186 (34%), Gaps = 3/186 (1%)
 Frame = +3

Query: 27   KQTKTQSFEEPSLEDQDPPPENIKKPKKQHSKASRPTEVLSDDGINPQPDYSKPLKKQPS 206
            K  K +S   P+ +++ P  E +K P K+    S PT+         +    +  +K P 
Sbjct: 1405 KSPKEKSPASPTKKEKSPAAEEVKSPTKKEKSPSSPTKKEKSPSSPTKKTGDEVKEKSPP 1464

Query: 207  RTRSKXXXXXXXXXXXYSKPLKKQNSKPSRSIEELSDGENPQPIYAXXXXXXXXXXXRPN 386
            ++ +K            S P+KK+ S  + +I E+S     +                  
Sbjct: 1465 KSPTKKEKSPEKPEDVKS-PVKKEKSPDATNIVEVSSETTIEKTETTMTTEMTHESEESR 1523

Query: 387  DDLSDEGFVPTIPQVRLSAKVDSSLSFP---DPPMDSSHSEELDPPPKASKKKGNHKPNP 557
              +  E         +   KVD     P   D   + S +EE+  P K  K     +  P
Sbjct: 1524 TSVKKE---------KTPEKVDEKPKSPTKKDKSPEKSITEEIKSPVKKEKSPEKVEEKP 1574

Query: 558  ASSANR 575
            AS   +
Sbjct: 1575 ASPTKK 1580

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
 Frame = +3

Query: 15   SKPKKQTKTQSFEE----PSLEDQDPPP---ENIKKPKKQHSKASRPTEVLSDDGINPQP 173
            S  KK+   +  EE    P+ +++ P     E +K P K+    S PT+   D+     P
Sbjct: 1790 SPTKKEKSPEKVEEKPASPTKKEKTPEKSAAEELKSPTKKEKSPSSPTKKTGDESKEKSP 1849

Query: 174  DYSKPLKKQPSRTRSKXXXXXXXXXXXYSKPLKKQNSKP 290
            +  KP +K  S T  K              P KK++  P
Sbjct: 1850 E--KPEEKPKSPTPKKSPP---------GSPKKKKSKSP 1877

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 42/219 (19%), Positives = 76/219 (34%), Gaps = 6/219 (2%)
 Frame = +3

Query: 24   KKQTKTQSFEEPSLEDQDPPPENIKKPKKQHSKASRPTEVLSDDGINPQPDYSKPLKKQ- 200
            K  TK +   E S+ ++   P+  K P+K   K   PT+       +   D   P KK+ 
Sbjct: 1599 KSPTKKEKSPEKSVVEELKSPKE-KSPEKADDKPKSPTKKEKSPEKSATEDVKSPTKKEK 1657

Query: 201  -PSRTRSKXXXXXXXXXXXYSKPLKKQNSKPSRSIEELSD----GENPQPIYAXXXXXXX 365
             P +   K            + P KK++S   ++ +E+       ++PQ +         
Sbjct: 1658 SPEKVEEKP-----------TSPTKKESSPTKKTDDEVKSPTKKEKSPQTV-EEKPASPT 1705

Query: 366  XXXXRPNDDLSDEGFVPTIPQVRLSAKVDSSLSFPDPPMDSSHSEELDPPPKASKKKGNH 545
                 P   + +E   P       + +   S +  +   + S +EE+  P K  K     
Sbjct: 1706 KKEKSPEKSVVEEVKSPKEKSPEKAEEKPKSPTKKEKSPEKSAAEEVKSPTKKEK----- 1760

Query: 546  KPNPASSANRXXXXXXXXXXXXXXXXXXQIRSNTSSERS 662
              +P  SA                    +++S T  E+S
Sbjct: 1761 --SPEKSAEEKPKSPTKKESSPVKMADDEVKSPTKKEKS 1797
>sp|Q14978|NOLC1_HUMAN Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein) (140 kDa
           nucleolar phosphoprotein) (Nopp140) (Nucleolar and
           coiled-body phosphoprotein 1)
          Length = 699

 Score = 38.5 bits (88), Expect = 0.022
 Identities = 49/208 (23%), Positives = 70/208 (33%), Gaps = 19/208 (9%)
 Frame = +3

Query: 3   QAGYSKPKKQTKTQSFEEPSLEDQDP------------------PPENIKK-PKKQHSKA 125
           +A  + PKK   + S  + S ED+ P                  PP+  +  PK  + KA
Sbjct: 155 KAAKAPPKKAKSSDSDSDSSSEDEPPKNQKPKITPVTVKAQTKAPPKPARAAPKIANGKA 214

Query: 126 SRPTEVLSDDGINPQPDYSKPLKKQPSRTRSKXXXXXXXXXXXYSKPLKKQNSKPSRSIE 305
           +  +   S    +   +  K     P +T  K            + P +K +S    S +
Sbjct: 215 ASSSSSSSSSSSSDDSEEEKAAAT-PKKTVPKKQVVAKAPVKAATTPTRKSSSSEDSSSD 273

Query: 306 ELSDGENPQPIYAXXXXXXXXXXXRPNDDLSDEGFVPTIPQVRLSAKVDSSLSFPDPPMD 485
           E  + E  +P+                      G  P    V     V+SS    D   D
Sbjct: 274 E--EEEQKKPMKNKPGPYSYAPPPSAPPPKKSLGTQPPKKAVEKQQPVESSEDSSDES-D 330

Query: 486 SSHSEELDPPPKASKKKGNHKPNPASSA 569
           SS  EE  PP KA   K   KP PA  A
Sbjct: 331 SSSEEEKKPPTKAVVSKATTKPPPAKKA 358
>sp|P32257|GAL11_KLULA Transcription regulatory protein GAL11
          Length = 1034

 Score = 37.4 bits (85), Expect = 0.048
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 6   AGYSKPKKQTKTQSFEEPSLEDQDPPPENIKKPKKQHSKAS--RPTE 140
           AG  KP+ Q   Q+ ++P ++ Q  PP   ++ ++Q SK S  RPTE
Sbjct: 454 AGVMKPQPQQTPQNIQQPMMQQQSSPPPQQQQQQQQQSKISVPRPTE 500
>sp|P19246|NFH_MOUSE Neurofilament triplet H protein (200 kDa neurofilament protein)
            (Neurofilament heavy polypeptide) (NF-H)
          Length = 1087

 Score = 35.0 bits (79), Expect = 0.24
 Identities = 25/104 (24%), Positives = 42/104 (40%)
 Frame = +3

Query: 21   PKKQTKTQSFEEPSLEDQDPPPENIKKPKKQHSKASRPTEVLSDDGINPQPDYSKPLKKQ 200
            P+ QT  Q  EE ++     PPE +K P K+ +K+    E  + + + P+    K   K 
Sbjct: 832  PEAQTPVQ--EEATVPTDIRPPEQVKSPAKEKAKSPEKEEAKTSEKVAPK----KEEVKS 885

Query: 201  PSRTRSKXXXXXXXXXXXYSKPLKKQNSKPSRSIEELSDGENPQ 332
            P +   K            + P  K  +K S+  E   +   P+
Sbjct: 886  PVKEEVKAKEPPKKVEEEKTLPTPKTEAKESKKDEAPKEAPKPK 929
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu)
           (Gu-alpha) (DEAD-box protein 21)
          Length = 783

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 15  SKPKKQTKTQSFEEPSLEDQDPP-PENIKKPKKQHSKASRPTEVLSDDGINPQPD 176
           SK KK TK    EEPS E+ D P P+ +KK K+ + +    +  L +   +P+PD
Sbjct: 109 SKTKKVTKN---EEPSEEEIDAPKPKKMKKEKEMNGETREKSPKLKNGFPHPEPD 160
>sp|Q95208|ICAL_SHEEP Calpastatin (Calpain inhibitor)
          Length = 723

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
 Frame = +3

Query: 12  YSKPKKQTKTQSFE-EPSLEDQDPPPENIKKPKKQHSKASRPTEVLSDDGINPQPDYSKP 188
           +S  KK+ K Q+ + EP  + Q   P  + + K Q  K    TE  S      QP     
Sbjct: 19  HSPNKKRHKKQAVKTEPEKKSQSTKPSVVHEKKTQEVKPKEHTEPKS------QP----- 67

Query: 189 LKKQPSRTRSKXXXXXXXXXXXYSKPLKKQNSKP-SRSIEELSDG 320
             K PS TRSK             +P  ++++KP ++S +E+S G
Sbjct: 68  --KHPSDTRSKHAPKEKAVSKSSEQPPSEKSTKPKTKSQDEISGG 110
>sp|P15205|MAP1B_RAT Microtubule-associated protein 1B (MAP 1B) (Neuraxin) [Contains: MAP1
            light chain LC1]
          Length = 2459

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
 Frame = +3

Query: 18   KPKKQTKTQSFEEPSLEDQDPPPENIKKPKKQHSKASRPTEVLSD-DGINPQPDYSKPLK 194
            KPKK+   +  + P  +D+ P  E  KK  K+  K     E+  +     P  D  K +K
Sbjct: 652  KPKKEVAKKEDKTPLKKDEKPKKEEAKKEIKKEIKKEEKKELKKEVKKETPLKDAKKEVK 711

Query: 195  KQPSRTRSKXXXXXXXXXXXYSKPLKK-----QNSKPSRSIEELSDGENP---QPIYA 344
            K   +   K            SK +KK        KP+    +++  E P   +PI A
Sbjct: 712  KDEKKEVKKEEKEPKKEIKKISKDIKKSTPLSDTKKPAALKPKVAKKEEPTKKEPIAA 769

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 20/100 (20%), Positives = 49/100 (49%)
 Frame = +3

Query: 15  SKPKKQTKTQSFEEPSLEDQDPPPENIKKPKKQHSKASRPTEVLSDDGINPQPDYSKPLK 194
           +KP+++ + +  +E + ++   P +  +KPKK+ +K     E+  ++    + +  K +K
Sbjct: 643 TKPEEKKEEKPKKEVAKKEDKTPLKKDEKPKKEEAKKEIKKEIKKEE----KKELKKEVK 698

Query: 195 KQPSRTRSKXXXXXXXXXXXYSKPLKKQNSKPSRSIEELS 314
           K+     +K             K +KK+  +P + I+++S
Sbjct: 699 KETPLKDAKKEVKKDE-----KKEVKKEEKEPKKEIKKIS 733
>sp|P14873|MAP1B_MOUSE Microtubule-associated protein 1B (MAP 1B) (MAP1.2) (MAP1(X))
           [Contains: MAP1 light chain LC1]
          Length = 2464

 Score = 33.9 bits (76), Expect = 0.53
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +3

Query: 18  KPKKQTKTQSFEEPSLEDQDPPPENIKKPKKQHSKASRPTEVLSD-DGINPQPDYSKPLK 194
           KPKK+   +  + P  +D+ P  E +KK  K+  K     E+  +     P  D  K +K
Sbjct: 653 KPKKEVVKKEDKTPLKKDEKPRKEEVKKEIKKEIKKEERKELKKEVKKETPLKDAKKEVK 712

Query: 195 KQPSRTRSKXXXXXXXXXXXYSKPLKK 275
           K+  +   K            SK +KK
Sbjct: 713 KEEKKEVKKEEKEPKKEIKKISKDIKK 739
>sp|Q9Y6V0|PCLO_HUMAN Piccolo protein (Aczonin)
          Length = 5183

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 42/175 (24%), Positives = 65/175 (37%), Gaps = 2/175 (1%)
 Frame = +3

Query: 51   EEPSL-EDQDPPPENIKKPKKQHSKASRPTEVLSDDGINPQPDYSKPLKKQPSRTRSKXX 227
            +EPS+  +QD  P    KPK Q       T+++S      +PD   P  K  S+   K  
Sbjct: 682  KEPSVPSEQDKAPVADDKPK-QPKMVKPTTDLVSSSSATTKPDI--PSSKVQSQAEEKT- 737

Query: 228  XXXXXXXXXYSKPLKKQNSKPSRSIEELSDGENPQPIYAXXXXXXXXXXXRPNDDLSDEG 407
                      + PLK  ++KPS+S     +   P    A                     
Sbjct: 738  ----------TPPLKTDSAKPSQSFPPTGEKVTPFDSKA--------------------- 766

Query: 408  FVPTIPQVRLSAKVDSSLSFPDPPMDSSHSEELDPPPKASK-KKGNHKPNPASSA 569
                IP+    +K+   +S P P  +S   +++DP  K  + KK   K +P   A
Sbjct: 767  ----IPRPASDSKI---ISHPGPSSESKGQKQVDPVQKKEEPKKAQTKMSPKPDA 814

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 45/186 (24%), Positives = 65/186 (34%), Gaps = 7/186 (3%)
 Frame = +3

Query: 33   TKTQSFEEPSLEDQDPPPENIKKPKKQHSKASRPTEVLSDDGINPQPDYSKPLKKQPSRT 212
            T T +  + S + Q   P+    PK+  SKA             P+P    PL KQP+  
Sbjct: 613  TTTSAVSKSSPQPQQTSPKKDAAPKQDLSKA-------------PEPKKPPPLVKQPTLH 659

Query: 213  RS-KXXXXXXXXXXXYSKPL-KKQNSKPSRSIE-ELSDGENPQPIYAXXXXXXXXXXXRP 383
             S              SKP   K+ S PS   +  ++D +  QP              +P
Sbjct: 660  GSPSAKAKQPPEADSLSKPAPPKEPSVPSEQDKAPVADDKPKQP-----------KMVKP 708

Query: 384  NDDLSDEGFVPTIPQVRLSAKVDSSLSFPDPPM--DSSHSEELDPP--PKASKKKGNHKP 551
              DL       T P +  S     +     PP+  DS+   +  PP   K +       P
Sbjct: 709  TTDLVSSSSATTKPDIPSSKVQSQAEEKTTPPLKTDSAKPSQSFPPTGEKVTPFDSKAIP 768

Query: 552  NPASSA 569
             PAS +
Sbjct: 769  RPASDS 774
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,100,101
Number of Sequences: 369166
Number of extensions: 1532288
Number of successful extensions: 5911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5813
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)