Planaria EST Database


DrC_01366

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01366
         (569 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7TPR4|ACTN1_MOUSE  Alpha-actinin 1 (Alpha-actinin cytosk...   124   2e-28
sp|Q90734|ACTN4_CHICK  Alpha-actinin 4 (Non-muscle alpha-act...   123   4e-28
sp|P12814|ACTN1_HUMAN  Alpha-actinin 1 (Alpha-actinin cytosk...   123   4e-28
sp|Q9Z1P2|ACTN1_RAT  Alpha-actinin 1 (Alpha-actinin cytoskel...   121   1e-27
sp|P57780|ACTN4_MOUSE  Alpha-actinin 4 (Non-muscle alpha-act...   120   2e-27
sp|O43707|ACTN4_HUMAN  Alpha-actinin 4 (Non-muscle alpha-act...   120   3e-27
sp|Q9QXQ0|ACTN4_RAT  Alpha-actinin 4 (Non-muscle alpha-actin...   118   1e-26
sp|P05094|ACTN1_CHICK  Alpha-actinin 1 (Alpha-actinin cytosk...   117   2e-26
sp|O88990|ACTN3_MOUSE  Alpha-actinin 3 (Alpha actinin skelet...   115   6e-26
sp|Q08043|ACTN3_HUMAN  Alpha-actinin 3 (Alpha actinin skelet...   113   3e-25
>sp|Q7TPR4|ACTN1_MOUSE Alpha-actinin 1 (Alpha-actinin cytoskeletal isoform) (Non-muscle
            alpha-actinin 1) (F-actin cross linking protein)
          Length = 892

 Score =  124 bits (310), Expect = 2e-28
 Identities = 58/85 (68%), Positives = 68/85 (80%)
 Frame = +1

Query: 1    VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
            VTF AFIDFM+ ETAD D++DQ++ SFK+LAGDK+YITE+ELRRELP +QAEYCIA MAP
Sbjct: 807  VTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITEDELRRELPPDQAEYCIARMAP 866

Query: 181  YTGPSGDVRGYDYQSFSNSLYGLSD 255
            Y GP       DY SFS +LYG SD
Sbjct: 867  YAGPDSVPGALDYMSFSTALYGESD 891
>sp|Q90734|ACTN4_CHICK Alpha-actinin 4 (Non-muscle alpha-actinin 4) (F-actin cross linking
            protein)
          Length = 904

 Score =  123 bits (308), Expect = 4e-28
 Identities = 59/85 (69%), Positives = 67/85 (78%)
 Frame = +1

Query: 1    VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
            VTF AFIDFM+ ET D D++DQ++ SFKVLAGDK+YIT EELRRELP EQAEYCIA MAP
Sbjct: 819  VTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKNYITAEELRRELPPEQAEYCIARMAP 878

Query: 181  YTGPSGDVRGYDYQSFSNSLYGLSD 255
            Y GP       DY+SFS +LYG SD
Sbjct: 879  YRGPDAAPGALDYKSFSTALYGESD 903
>sp|P12814|ACTN1_HUMAN Alpha-actinin 1 (Alpha-actinin cytoskeletal isoform) (Non-muscle
            alpha-actinin 1) (F-actin cross linking protein)
          Length = 892

 Score =  123 bits (308), Expect = 4e-28
 Identities = 58/85 (68%), Positives = 68/85 (80%)
 Frame = +1

Query: 1    VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
            VTF AFIDFM+ ETAD D++DQ++ SFK+LAGDK+YIT +ELRRELP +QAEYCIA MAP
Sbjct: 807  VTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITMDELRRELPPDQAEYCIARMAP 866

Query: 181  YTGPSGDVRGYDYQSFSNSLYGLSD 255
            YTGP       DY SFS +LYG SD
Sbjct: 867  YTGPDSVPGALDYMSFSTALYGESD 891
>sp|Q9Z1P2|ACTN1_RAT Alpha-actinin 1 (Alpha-actinin cytoskeletal isoform) (Non-muscle
            alpha-actinin 1) (F-actin cross linking protein)
          Length = 892

 Score =  121 bits (303), Expect = 1e-27
 Identities = 57/85 (67%), Positives = 67/85 (78%)
 Frame = +1

Query: 1    VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
            VTF AFIDFM+ ETAD D++DQ++ SFK+LAGDK+YIT +ELRRELP +QAEYCIA MAP
Sbjct: 807  VTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITGDELRRELPPDQAEYCIARMAP 866

Query: 181  YTGPSGDVRGYDYQSFSNSLYGLSD 255
            Y GP       DY SFS +LYG SD
Sbjct: 867  YAGPDSVPGALDYMSFSTALYGESD 891
>sp|P57780|ACTN4_MOUSE Alpha-actinin 4 (Non-muscle alpha-actinin 4) (F-actin cross linking
            protein)
          Length = 912

 Score =  120 bits (301), Expect = 2e-27
 Identities = 57/85 (67%), Positives = 67/85 (78%)
 Frame = +1

Query: 1    VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
            VTF AFIDFM+ ET D D++DQ++ SFKVLAGDK++IT EELRRELP +QAEYCIA MAP
Sbjct: 827  VTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKNFITAEELRRELPPDQAEYCIARMAP 886

Query: 181  YTGPSGDVRGYDYQSFSNSLYGLSD 255
            Y GP       DY+SFS +LYG SD
Sbjct: 887  YQGPDAAPGALDYKSFSTALYGESD 911
>sp|O43707|ACTN4_HUMAN Alpha-actinin 4 (Non-muscle alpha-actinin 4) (F-actin cross linking
            protein)
          Length = 911

 Score =  120 bits (300), Expect = 3e-27
 Identities = 57/85 (67%), Positives = 67/85 (78%)
 Frame = +1

Query: 1    VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
            VTF AFIDFM+ ET D D++DQ++ SFKVLAGDK++IT EELRRELP +QAEYCIA MAP
Sbjct: 826  VTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKNFITAEELRRELPPDQAEYCIARMAP 885

Query: 181  YTGPSGDVRGYDYQSFSNSLYGLSD 255
            Y GP       DY+SFS +LYG SD
Sbjct: 886  YQGPDAVPGALDYKSFSTALYGESD 910
>sp|Q9QXQ0|ACTN4_RAT Alpha-actinin 4 (Non-muscle alpha-actinin 4) (F-actin cross linking
            protein)
          Length = 911

 Score =  118 bits (295), Expect = 1e-26
 Identities = 56/85 (65%), Positives = 67/85 (78%)
 Frame = +1

Query: 1    VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
            VTF AFIDFM+ ET D D++DQ++ SFKVLAGDK++IT EELR+ELP +QAEYCIA MAP
Sbjct: 826  VTFQAFIDFMSKETTDTDTADQVIGSFKVLAGDKNFITVEELRKELPPDQAEYCIARMAP 885

Query: 181  YTGPSGDVRGYDYQSFSNSLYGLSD 255
            Y GP       DY+SFS +LYG SD
Sbjct: 886  YQGPDAAPGALDYKSFSTALYGESD 910
>sp|P05094|ACTN1_CHICK Alpha-actinin 1 (Alpha-actinin cytoskeletal isoform) (Non-muscle
            alpha-actinin 1) (F-actin cross linking protein)
          Length = 893

 Score =  117 bits (294), Expect = 2e-26
 Identities = 56/85 (65%), Positives = 66/85 (77%)
 Frame = +1

Query: 1    VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
            VTF AFIDFM+ ETAD D++DQ++ SFK+LAGDK+YIT +ELRRELP +QAEYCIA MAP
Sbjct: 808  VTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITVDELRRELPPDQAEYCIARMAP 867

Query: 181  YTGPSGDVRGYDYQSFSNSLYGLSD 255
            Y G        DY SFS +LYG SD
Sbjct: 868  YNGRDAVPGALDYMSFSTALYGESD 892
>sp|O88990|ACTN3_MOUSE Alpha-actinin 3 (Alpha actinin skeletal muscle isoform 3) (F-actin
            cross linking protein)
          Length = 900

 Score =  115 bits (289), Expect = 6e-26
 Identities = 55/85 (64%), Positives = 66/85 (77%)
 Frame = +1

Query: 1    VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
            VTF AFIDFMT ETA+ D+++Q++ SFK+LAGDK+YIT EELRRELP EQAEYCI  MAP
Sbjct: 815  VTFQAFIDFMTRETAETDTAEQVVASFKILAGDKNYITPEELRRELPAEQAEYCIRRMAP 874

Query: 181  YTGPSGDVRGYDYQSFSNSLYGLSD 255
            Y G        DY +FS++LYG SD
Sbjct: 875  YKGSGAPSGALDYVAFSSALYGESD 899
>sp|Q08043|ACTN3_HUMAN Alpha-actinin 3 (Alpha actinin skeletal muscle isoform 3) (F-actin
            cross linking protein)
          Length = 901

 Score =  113 bits (283), Expect = 3e-25
 Identities = 53/85 (62%), Positives = 65/85 (76%)
 Frame = +1

Query: 1    VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
            VTF AFIDFMT ETA+ D+++Q++ SFK+LAGDK+YIT EELRRELP +QAEYCI  M P
Sbjct: 816  VTFQAFIDFMTRETAETDTTEQVVASFKILAGDKNYITPEELRRELPAKQAEYCIRRMVP 875

Query: 181  YTGPSGDVRGYDYQSFSNSLYGLSD 255
            Y G        DY +FS++LYG SD
Sbjct: 876  YKGSGAPAGALDYVAFSSALYGESD 900
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,997,854
Number of Sequences: 369166
Number of extensions: 966580
Number of successful extensions: 2420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2419
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)