Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N20
(569 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7TPR4|ACTN1_MOUSE Alpha-actinin 1 (Alpha-actinin cytosk... 124 2e-28
sp|Q90734|ACTN4_CHICK Alpha-actinin 4 (Non-muscle alpha-act... 123 4e-28
sp|P12814|ACTN1_HUMAN Alpha-actinin 1 (Alpha-actinin cytosk... 123 4e-28
sp|Q9Z1P2|ACTN1_RAT Alpha-actinin 1 (Alpha-actinin cytoskel... 121 1e-27
sp|P57780|ACTN4_MOUSE Alpha-actinin 4 (Non-muscle alpha-act... 120 2e-27
sp|O43707|ACTN4_HUMAN Alpha-actinin 4 (Non-muscle alpha-act... 120 3e-27
sp|Q9QXQ0|ACTN4_RAT Alpha-actinin 4 (Non-muscle alpha-actin... 118 1e-26
sp|P05094|ACTN1_CHICK Alpha-actinin 1 (Alpha-actinin cytosk... 117 2e-26
sp|O88990|ACTN3_MOUSE Alpha-actinin 3 (Alpha actinin skelet... 115 6e-26
sp|Q08043|ACTN3_HUMAN Alpha-actinin 3 (Alpha actinin skelet... 113 3e-25
>sp|Q7TPR4|ACTN1_MOUSE Alpha-actinin 1 (Alpha-actinin cytoskeletal isoform) (Non-muscle
alpha-actinin 1) (F-actin cross linking protein)
Length = 892
Score = 124 bits (310), Expect = 2e-28
Identities = 58/85 (68%), Positives = 68/85 (80%)
Frame = +1
Query: 1 VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
VTF AFIDFM+ ETAD D++DQ++ SFK+LAGDK+YITE+ELRRELP +QAEYCIA MAP
Sbjct: 807 VTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITEDELRRELPPDQAEYCIARMAP 866
Query: 181 YTGPSGDVRGYDYQSFSNSLYGLSD 255
Y GP DY SFS +LYG SD
Sbjct: 867 YAGPDSVPGALDYMSFSTALYGESD 891
>sp|Q90734|ACTN4_CHICK Alpha-actinin 4 (Non-muscle alpha-actinin 4) (F-actin cross linking
protein)
Length = 904
Score = 123 bits (308), Expect = 4e-28
Identities = 59/85 (69%), Positives = 67/85 (78%)
Frame = +1
Query: 1 VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
VTF AFIDFM+ ET D D++DQ++ SFKVLAGDK+YIT EELRRELP EQAEYCIA MAP
Sbjct: 819 VTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKNYITAEELRRELPPEQAEYCIARMAP 878
Query: 181 YTGPSGDVRGYDYQSFSNSLYGLSD 255
Y GP DY+SFS +LYG SD
Sbjct: 879 YRGPDAAPGALDYKSFSTALYGESD 903
>sp|P12814|ACTN1_HUMAN Alpha-actinin 1 (Alpha-actinin cytoskeletal isoform) (Non-muscle
alpha-actinin 1) (F-actin cross linking protein)
Length = 892
Score = 123 bits (308), Expect = 4e-28
Identities = 58/85 (68%), Positives = 68/85 (80%)
Frame = +1
Query: 1 VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
VTF AFIDFM+ ETAD D++DQ++ SFK+LAGDK+YIT +ELRRELP +QAEYCIA MAP
Sbjct: 807 VTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITMDELRRELPPDQAEYCIARMAP 866
Query: 181 YTGPSGDVRGYDYQSFSNSLYGLSD 255
YTGP DY SFS +LYG SD
Sbjct: 867 YTGPDSVPGALDYMSFSTALYGESD 891
>sp|Q9Z1P2|ACTN1_RAT Alpha-actinin 1 (Alpha-actinin cytoskeletal isoform) (Non-muscle
alpha-actinin 1) (F-actin cross linking protein)
Length = 892
Score = 121 bits (303), Expect = 1e-27
Identities = 57/85 (67%), Positives = 67/85 (78%)
Frame = +1
Query: 1 VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
VTF AFIDFM+ ETAD D++DQ++ SFK+LAGDK+YIT +ELRRELP +QAEYCIA MAP
Sbjct: 807 VTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITGDELRRELPPDQAEYCIARMAP 866
Query: 181 YTGPSGDVRGYDYQSFSNSLYGLSD 255
Y GP DY SFS +LYG SD
Sbjct: 867 YAGPDSVPGALDYMSFSTALYGESD 891
>sp|P57780|ACTN4_MOUSE Alpha-actinin 4 (Non-muscle alpha-actinin 4) (F-actin cross linking
protein)
Length = 912
Score = 120 bits (301), Expect = 2e-27
Identities = 57/85 (67%), Positives = 67/85 (78%)
Frame = +1
Query: 1 VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
VTF AFIDFM+ ET D D++DQ++ SFKVLAGDK++IT EELRRELP +QAEYCIA MAP
Sbjct: 827 VTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKNFITAEELRRELPPDQAEYCIARMAP 886
Query: 181 YTGPSGDVRGYDYQSFSNSLYGLSD 255
Y GP DY+SFS +LYG SD
Sbjct: 887 YQGPDAAPGALDYKSFSTALYGESD 911
>sp|O43707|ACTN4_HUMAN Alpha-actinin 4 (Non-muscle alpha-actinin 4) (F-actin cross linking
protein)
Length = 911
Score = 120 bits (300), Expect = 3e-27
Identities = 57/85 (67%), Positives = 67/85 (78%)
Frame = +1
Query: 1 VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
VTF AFIDFM+ ET D D++DQ++ SFKVLAGDK++IT EELRRELP +QAEYCIA MAP
Sbjct: 826 VTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKNFITAEELRRELPPDQAEYCIARMAP 885
Query: 181 YTGPSGDVRGYDYQSFSNSLYGLSD 255
Y GP DY+SFS +LYG SD
Sbjct: 886 YQGPDAVPGALDYKSFSTALYGESD 910
>sp|Q9QXQ0|ACTN4_RAT Alpha-actinin 4 (Non-muscle alpha-actinin 4) (F-actin cross linking
protein)
Length = 911
Score = 118 bits (295), Expect = 1e-26
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +1
Query: 1 VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
VTF AFIDFM+ ET D D++DQ++ SFKVLAGDK++IT EELR+ELP +QAEYCIA MAP
Sbjct: 826 VTFQAFIDFMSKETTDTDTADQVIGSFKVLAGDKNFITVEELRKELPPDQAEYCIARMAP 885
Query: 181 YTGPSGDVRGYDYQSFSNSLYGLSD 255
Y GP DY+SFS +LYG SD
Sbjct: 886 YQGPDAAPGALDYKSFSTALYGESD 910
>sp|P05094|ACTN1_CHICK Alpha-actinin 1 (Alpha-actinin cytoskeletal isoform) (Non-muscle
alpha-actinin 1) (F-actin cross linking protein)
Length = 893
Score = 117 bits (294), Expect = 2e-26
Identities = 56/85 (65%), Positives = 66/85 (77%)
Frame = +1
Query: 1 VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
VTF AFIDFM+ ETAD D++DQ++ SFK+LAGDK+YIT +ELRRELP +QAEYCIA MAP
Sbjct: 808 VTFQAFIDFMSRETADTDTADQVMASFKILAGDKNYITVDELRRELPPDQAEYCIARMAP 867
Query: 181 YTGPSGDVRGYDYQSFSNSLYGLSD 255
Y G DY SFS +LYG SD
Sbjct: 868 YNGRDAVPGALDYMSFSTALYGESD 892
>sp|O88990|ACTN3_MOUSE Alpha-actinin 3 (Alpha actinin skeletal muscle isoform 3) (F-actin
cross linking protein)
Length = 900
Score = 115 bits (289), Expect = 6e-26
Identities = 55/85 (64%), Positives = 66/85 (77%)
Frame = +1
Query: 1 VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
VTF AFIDFMT ETA+ D+++Q++ SFK+LAGDK+YIT EELRRELP EQAEYCI MAP
Sbjct: 815 VTFQAFIDFMTRETAETDTAEQVVASFKILAGDKNYITPEELRRELPAEQAEYCIRRMAP 874
Query: 181 YTGPSGDVRGYDYQSFSNSLYGLSD 255
Y G DY +FS++LYG SD
Sbjct: 875 YKGSGAPSGALDYVAFSSALYGESD 899
>sp|Q08043|ACTN3_HUMAN Alpha-actinin 3 (Alpha actinin skeletal muscle isoform 3) (F-actin
cross linking protein)
Length = 901
Score = 113 bits (283), Expect = 3e-25
Identities = 53/85 (62%), Positives = 65/85 (76%)
Frame = +1
Query: 1 VTFDAFIDFMTHETADEDSSDQILRSFKVLAGDKDYITEEELRRELPKEQAEYCIANMAP 180
VTF AFIDFMT ETA+ D+++Q++ SFK+LAGDK+YIT EELRRELP +QAEYCI M P
Sbjct: 816 VTFQAFIDFMTRETAETDTTEQVVASFKILAGDKNYITPEELRRELPAKQAEYCIRRMVP 875
Query: 181 YTGPSGDVRGYDYQSFSNSLYGLSD 255
Y G DY +FS++LYG SD
Sbjct: 876 YKGSGAPAGALDYVAFSSALYGESD 900
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,997,854
Number of Sequences: 369166
Number of extensions: 966580
Number of successful extensions: 2420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2419
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)