Planaria EST Database


DrC_01365

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01365
         (793 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60954|MEIS1_MOUSE  Homeobox protein Meis1 (Myeloid ecotr...   144   3e-34
sp|O00470|MEIS1_HUMAN  Homeobox protein Meis1                     144   3e-34
sp|P79937|MEIS1_XENLA  Homeobox protein Meis1 (XMeis1)            144   4e-34
sp|O14770|MEIS2_HUMAN  Homeobox protein Meis2 (Meis1-related...   141   2e-33
sp|P97367|MEIS2_MOUSE  Homeobox protein Meis2 (Meis1-related...   140   4e-33
sp|P97368|MEIS3_MOUSE  Homeobox protein Meis3 (Meis1-related...   138   2e-32
sp|Q99687|MEIS3_HUMAN  Homeobox protein Meis3 (Meis1-related...   138   2e-32
sp|Q96KN3|PKNX2_HUMAN  Homeobox protein PKNOX2 (PBX/knotted ...   107   4e-23
sp|P55347|PKNX1_HUMAN  Homeobox protein PKNOX1 (PBX/knotted ...   105   1e-22
sp|O70477|PKNX1_MOUSE  Homeobox protein PKNOX1 (PBX/knotted ...   105   1e-22
>sp|Q60954|MEIS1_MOUSE Homeobox protein Meis1 (Myeloid ecotropic viral integration site-1)
          Length = 390

 Score =  144 bits (363), Expect = 3e-34
 Identities = 75/96 (78%), Positives = 77/96 (80%), Gaps = 3/96 (3%)
 Frame = +3

Query: 3   GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
           GIFPKVATNIMRAWLFQHL+HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 277 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 336

Query: 183 QSNRAGPHGYPNDPAGYLP---YMDNQQLAYARATG 281
           QSNRA   G P +P G       MD QQ    RA G
Sbjct: 337 QSNRAVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPG 372
>sp|O00470|MEIS1_HUMAN Homeobox protein Meis1
          Length = 390

 Score =  144 bits (363), Expect = 3e-34
 Identities = 75/96 (78%), Positives = 77/96 (80%), Gaps = 3/96 (3%)
 Frame = +3

Query: 3   GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
           GIFPKVATNIMRAWLFQHL+HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 277 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 336

Query: 183 QSNRAGPHGYPNDPAGYLP---YMDNQQLAYARATG 281
           QSNRA   G P +P G       MD QQ    RA G
Sbjct: 337 QSNRAVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPG 372
>sp|P79937|MEIS1_XENLA Homeobox protein Meis1 (XMeis1)
          Length = 390

 Score =  144 bits (362), Expect = 4e-34
 Identities = 76/97 (78%), Positives = 78/97 (80%), Gaps = 4/97 (4%)
 Frame = +3

Query: 3   GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
           GIFPKVATNIMRAWLFQHL+HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 277 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 336

Query: 183 QSNRAGPHGYPNDPAGYLP----YMDNQQLAYARATG 281
           QSNRA   G P +P G  P     MD QQ    RA G
Sbjct: 337 QSNRAVSQGTPYNPDGQ-PIGGFVMDGQQHMGIRAPG 372
>sp|O14770|MEIS2_HUMAN Homeobox protein Meis2 (Meis1-related protein 1)
          Length = 477

 Score =  141 bits (355), Expect = 2e-33
 Identities = 88/170 (51%), Positives = 99/170 (58%), Gaps = 23/170 (13%)
 Frame = +3

Query: 3   GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
           GIFPKVATNIMRAWLFQHL+HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 281 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 340

Query: 183 QSNRAGPHGYPNDP-----AGYLP--------YMDNQQLAYARATGFHQAIP-------- 299
           QSNRA   G+  DP     A Y P         +D QQ    R  G  Q++P        
Sbjct: 341 QSNRA---GFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGL-QSMPGDYVSQGG 396

Query: 300 --NMDQLYNAAVPSHLSPHPPIGCHYGLPPSYHSTNTSNGLFNSAGSPHT 443
              M     +  P  ++PHP    H     SY  ++  +      G P T
Sbjct: 397 PMGMSMAQPSYTPPQMTPHPTQLRHGPPMHSYLPSHPHHPAMMMHGGPPT 446
>sp|P97367|MEIS2_MOUSE Homeobox protein Meis2 (Meis1-related protein 1)
          Length = 477

 Score =  140 bits (353), Expect = 4e-33
 Identities = 82/140 (58%), Positives = 90/140 (64%), Gaps = 23/140 (16%)
 Frame = +3

Query: 3   GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
           GIFPKVATNIMRAWLFQHL+HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 281 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 340

Query: 183 QSNRAGPHGYPNDP-----AGYLP--------YMDNQQLAYARATGFHQAIP-------- 299
           QSNRA   G+  DP     A Y P         +D QQ    R  G  Q++P        
Sbjct: 341 QSNRA---GFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGL-QSMPGDYVSQGG 396

Query: 300 --NMDQLYNAAVPSHLSPHP 353
              M     +  P  ++PHP
Sbjct: 397 PMGMGMAQPSYTPPQMTPHP 416
>sp|P97368|MEIS3_MOUSE Homeobox protein Meis3 (Meis1-related protein 2)
          Length = 378

 Score =  138 bits (347), Expect = 2e-32
 Identities = 68/77 (88%), Positives = 68/77 (88%), Gaps = 6/77 (7%)
 Frame = +3

Query: 3   GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
           GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 270 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 329

Query: 183 QSNRAG------PHGYP 215
           QSNR G      P G P
Sbjct: 330 QSNRTGQGASFNPEGQP 346
>sp|Q99687|MEIS3_HUMAN Homeobox protein Meis3 (Meis1-related protein 2)
          Length = 375

 Score =  138 bits (347), Expect = 2e-32
 Identities = 68/77 (88%), Positives = 68/77 (88%), Gaps = 6/77 (7%)
 Frame = +3

Query: 3   GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
           GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 267 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 326

Query: 183 QSNRAG------PHGYP 215
           QSNR G      P G P
Sbjct: 327 QSNRTGQGAAFSPEGQP 343
>sp|Q96KN3|PKNX2_HUMAN Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein
           preP-2)
          Length = 460

 Score =  107 bits (267), Expect = 4e-23
 Identities = 46/63 (73%), Positives = 56/63 (88%)
 Frame = +3

Query: 3   GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
           G+ PK ATNIMR+WLFQHL HPYP+E++K+Q+A  T LT+LQVNNWFINARRRI+QPM+D
Sbjct: 281 GVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLD 340

Query: 183 QSN 191
            SN
Sbjct: 341 ASN 343
>sp|P55347|PKNX1_HUMAN Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein
           preP-1)
          Length = 435

 Score =  105 bits (263), Expect = 1e-22
 Identities = 44/62 (70%), Positives = 55/62 (88%)
 Frame = +3

Query: 3   GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
           G+ PK ATN+MR+WLFQH+ HPYP+E++KKQ+A  T LT+LQVNNWFINARRRI+QPM+D
Sbjct: 263 GVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLD 322

Query: 183 QS 188
            S
Sbjct: 323 SS 324
>sp|O70477|PKNX1_MOUSE Homeobox protein PKNOX1 (PBX/knotted homeobox 1)
          Length = 435

 Score =  105 bits (263), Expect = 1e-22
 Identities = 44/62 (70%), Positives = 55/62 (88%)
 Frame = +3

Query: 3   GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
           G+ PK ATN+MR+WLFQH+ HPYP+E++KKQ+A  T LT+LQVNNWFINARRRI+QPM+D
Sbjct: 263 GVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLD 322

Query: 183 QS 188
            S
Sbjct: 323 SS 324
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,646,299
Number of Sequences: 369166
Number of extensions: 2079385
Number of successful extensions: 5849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5838
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)