Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N16
(793 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60954|MEIS1_MOUSE Homeobox protein Meis1 (Myeloid ecotr... 144 3e-34
sp|O00470|MEIS1_HUMAN Homeobox protein Meis1 144 3e-34
sp|P79937|MEIS1_XENLA Homeobox protein Meis1 (XMeis1) 144 4e-34
sp|O14770|MEIS2_HUMAN Homeobox protein Meis2 (Meis1-related... 141 2e-33
sp|P97367|MEIS2_MOUSE Homeobox protein Meis2 (Meis1-related... 140 4e-33
sp|P97368|MEIS3_MOUSE Homeobox protein Meis3 (Meis1-related... 138 2e-32
sp|Q99687|MEIS3_HUMAN Homeobox protein Meis3 (Meis1-related... 138 2e-32
sp|Q96KN3|PKNX2_HUMAN Homeobox protein PKNOX2 (PBX/knotted ... 107 4e-23
sp|P55347|PKNX1_HUMAN Homeobox protein PKNOX1 (PBX/knotted ... 105 1e-22
sp|O70477|PKNX1_MOUSE Homeobox protein PKNOX1 (PBX/knotted ... 105 1e-22
>sp|Q60954|MEIS1_MOUSE Homeobox protein Meis1 (Myeloid ecotropic viral integration site-1)
Length = 390
Score = 144 bits (363), Expect = 3e-34
Identities = 75/96 (78%), Positives = 77/96 (80%), Gaps = 3/96 (3%)
Frame = +3
Query: 3 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
GIFPKVATNIMRAWLFQHL+HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 277 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 336
Query: 183 QSNRAGPHGYPNDPAGYLP---YMDNQQLAYARATG 281
QSNRA G P +P G MD QQ RA G
Sbjct: 337 QSNRAVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPG 372
>sp|O00470|MEIS1_HUMAN Homeobox protein Meis1
Length = 390
Score = 144 bits (363), Expect = 3e-34
Identities = 75/96 (78%), Positives = 77/96 (80%), Gaps = 3/96 (3%)
Frame = +3
Query: 3 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
GIFPKVATNIMRAWLFQHL+HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 277 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 336
Query: 183 QSNRAGPHGYPNDPAGYLP---YMDNQQLAYARATG 281
QSNRA G P +P G MD QQ RA G
Sbjct: 337 QSNRAVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPG 372
>sp|P79937|MEIS1_XENLA Homeobox protein Meis1 (XMeis1)
Length = 390
Score = 144 bits (362), Expect = 4e-34
Identities = 76/97 (78%), Positives = 78/97 (80%), Gaps = 4/97 (4%)
Frame = +3
Query: 3 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
GIFPKVATNIMRAWLFQHL+HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 277 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 336
Query: 183 QSNRAGPHGYPNDPAGYLP----YMDNQQLAYARATG 281
QSNRA G P +P G P MD QQ RA G
Sbjct: 337 QSNRAVSQGTPYNPDGQ-PIGGFVMDGQQHMGIRAPG 372
>sp|O14770|MEIS2_HUMAN Homeobox protein Meis2 (Meis1-related protein 1)
Length = 477
Score = 141 bits (355), Expect = 2e-33
Identities = 88/170 (51%), Positives = 99/170 (58%), Gaps = 23/170 (13%)
Frame = +3
Query: 3 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
GIFPKVATNIMRAWLFQHL+HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 281 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 340
Query: 183 QSNRAGPHGYPNDP-----AGYLP--------YMDNQQLAYARATGFHQAIP-------- 299
QSNRA G+ DP A Y P +D QQ R G Q++P
Sbjct: 341 QSNRA---GFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGL-QSMPGDYVSQGG 396
Query: 300 --NMDQLYNAAVPSHLSPHPPIGCHYGLPPSYHSTNTSNGLFNSAGSPHT 443
M + P ++PHP H SY ++ + G P T
Sbjct: 397 PMGMSMAQPSYTPPQMTPHPTQLRHGPPMHSYLPSHPHHPAMMMHGGPPT 446
>sp|P97367|MEIS2_MOUSE Homeobox protein Meis2 (Meis1-related protein 1)
Length = 477
Score = 140 bits (353), Expect = 4e-33
Identities = 82/140 (58%), Positives = 90/140 (64%), Gaps = 23/140 (16%)
Frame = +3
Query: 3 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
GIFPKVATNIMRAWLFQHL+HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 281 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 340
Query: 183 QSNRAGPHGYPNDP-----AGYLP--------YMDNQQLAYARATGFHQAIP-------- 299
QSNRA G+ DP A Y P +D QQ R G Q++P
Sbjct: 341 QSNRA---GFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGL-QSMPGDYVSQGG 396
Query: 300 --NMDQLYNAAVPSHLSPHP 353
M + P ++PHP
Sbjct: 397 PMGMGMAQPSYTPPQMTPHP 416
>sp|P97368|MEIS3_MOUSE Homeobox protein Meis3 (Meis1-related protein 2)
Length = 378
Score = 138 bits (347), Expect = 2e-32
Identities = 68/77 (88%), Positives = 68/77 (88%), Gaps = 6/77 (7%)
Frame = +3
Query: 3 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 270 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 329
Query: 183 QSNRAG------PHGYP 215
QSNR G P G P
Sbjct: 330 QSNRTGQGASFNPEGQP 346
>sp|Q99687|MEIS3_HUMAN Homeobox protein Meis3 (Meis1-related protein 2)
Length = 375
Score = 138 bits (347), Expect = 2e-32
Identities = 68/77 (88%), Positives = 68/77 (88%), Gaps = 6/77 (7%)
Frame = +3
Query: 3 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID
Sbjct: 267 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 326
Query: 183 QSNRAG------PHGYP 215
QSNR G P G P
Sbjct: 327 QSNRTGQGAAFSPEGQP 343
>sp|Q96KN3|PKNX2_HUMAN Homeobox protein PKNOX2 (PBX/knotted homeobox 2) (Homeobox protein
preP-2)
Length = 460
Score = 107 bits (267), Expect = 4e-23
Identities = 46/63 (73%), Positives = 56/63 (88%)
Frame = +3
Query: 3 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
G+ PK ATNIMR+WLFQHL HPYP+E++K+Q+A T LT+LQVNNWFINARRRI+QPM+D
Sbjct: 281 GVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLD 340
Query: 183 QSN 191
SN
Sbjct: 341 ASN 343
>sp|P55347|PKNX1_HUMAN Homeobox protein PKNOX1 (PBX/knotted homeobox 1) (Homeobox protein
preP-1)
Length = 435
Score = 105 bits (263), Expect = 1e-22
Identities = 44/62 (70%), Positives = 55/62 (88%)
Frame = +3
Query: 3 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
G+ PK ATN+MR+WLFQH+ HPYP+E++KKQ+A T LT+LQVNNWFINARRRI+QPM+D
Sbjct: 263 GVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLD 322
Query: 183 QS 188
S
Sbjct: 323 SS 324
>sp|O70477|PKNX1_MOUSE Homeobox protein PKNOX1 (PBX/knotted homeobox 1)
Length = 435
Score = 105 bits (263), Expect = 1e-22
Identities = 44/62 (70%), Positives = 55/62 (88%)
Frame = +3
Query: 3 GIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 182
G+ PK ATN+MR+WLFQH+ HPYP+E++KKQ+A T LT+LQVNNWFINARRRI+QPM+D
Sbjct: 263 GVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLD 322
Query: 183 QS 188
S
Sbjct: 323 SS 324
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,646,299
Number of Sequences: 369166
Number of extensions: 2079385
Number of successful extensions: 5849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5838
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)