Planaria EST Database


DrC_01361

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01361
         (110 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O35738|KLF12_MOUSE  Krueppel-like factor 12 (Transcriptio...    30   1.8  
sp|Q9Y4X4|KLF12_HUMAN  Krueppel-like factor 12 (Transcriptio...    30   1.8  
>sp|O35738|KLF12_MOUSE Krueppel-like factor 12 (Transcriptional repressor AP-2rep)
          Length = 402

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 15  MNLESNDLKIIKKIRS*VRSPPILITMVRSSG 110
           MNL+SN L  + +I   V+S P++ T VRS G
Sbjct: 173 MNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPG 204
>sp|Q9Y4X4|KLF12_HUMAN Krueppel-like factor 12 (Transcriptional repressor AP-2rep)
          Length = 402

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 15  MNLESNDLKIIKKIRS*VRSPPILITMVRSSG 110
           MNL+SN L  + +I   V+S P++ T VRS G
Sbjct: 173 MNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPG 204
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,619,347
Number of Sequences: 369166
Number of extensions: 84004
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 68,354,980
effective HSP length: 10
effective length of database: 66,507,630
effective search space used: 1729198380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)