Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N07
(110 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35738|KLF12_MOUSE Krueppel-like factor 12 (Transcriptio... 30 1.8
sp|Q9Y4X4|KLF12_HUMAN Krueppel-like factor 12 (Transcriptio... 30 1.8
>sp|O35738|KLF12_MOUSE Krueppel-like factor 12 (Transcriptional repressor AP-2rep)
Length = 402
Score = 30.0 bits (66), Expect = 1.8
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 15 MNLESNDLKIIKKIRS*VRSPPILITMVRSSG 110
MNL+SN L + +I V+S P++ T VRS G
Sbjct: 173 MNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPG 204
>sp|Q9Y4X4|KLF12_HUMAN Krueppel-like factor 12 (Transcriptional repressor AP-2rep)
Length = 402
Score = 30.0 bits (66), Expect = 1.8
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 15 MNLESNDLKIIKKIRS*VRSPPILITMVRSSG 110
MNL+SN L + +I V+S P++ T VRS G
Sbjct: 173 MNLQSNKLSHVHRIPVVVQSVPVVYTAVRSPG 204
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,619,347
Number of Sequences: 369166
Number of extensions: 84004
Number of successful extensions: 90
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 68,354,980
effective HSP length: 10
effective length of database: 66,507,630
effective search space used: 1729198380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)