Planaria EST Database


DrC_01358

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01358
         (889 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O08582|GTPB1_MOUSE  GTP-binding protein 1 (G-protein 1) (...   162   1e-39
sp|O00178|GTPB1_HUMAN  GTP-binding protein 1 (G-protein 1) (...   161   3e-39
sp|Q5R8Q7|GTPB1_PONPY  GTP-binding protein 1 (G-protein 1) (...   161   3e-39
sp|Q18905|CGP1_CAEEL  GTP-binding protein cgp-1                   152   9e-37
sp|Q17045|AGP1_ASCSU  GTP-binding protein AGP-1                   147   3e-35
sp|P44323|IF2_HAEIN  Translation initiation factor IF-2            44   5e-04
sp|Q9ZCZ8|IF2_RICPR  Translation initiation factor IF-2            43   0.001
sp|P59587|IF2_ECOL6  Translation initiation factor IF-2            42   0.002
sp|Q8Z3H7|IF2_SALTI  Translation initiation factor IF-2            42   0.002
sp|Q9ZF31|IF2_SALTY  Translation initiation factor IF-2            42   0.002
>sp|O08582|GTPB1_MOUSE GTP-binding protein 1 (G-protein 1) (GP-1)
          Length = 583

 Score =  162 bits (410), Expect = 1e-39
 Identities = 92/216 (42%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
 Frame = +1

Query: 166 NGKVTGLEPQELMESVMNLCKMAETLNASISVLRECHVGSRQALEILIRNVPTHFSTRET 345
           +G   GL   ++  S   +  MAE + A + +LRE      +  + L+R         E 
Sbjct: 17  DGTEYGLSEADMEASYATVKSMAEQIEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEV 76

Query: 346 RVAVLGNMDAGKSTLIGVLTQGVLDNGQGKTRLATFRHIHEVRSGRTSSISCQLLGFDKD 525
           RVAV+GN+DAGKSTL+GVLT G LDNG+G  R   FRH HE+ SGRTSS+   +LGFD +
Sbjct: 77  RVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSE 136

Query: 526 HNLFNFYWQKNRLHQRSHE--EVVLSSSKLVTLIDLAGYHKYQRTTLFALTARRPHLVLL 699
            N+ N    K   H  S E  ++   SSK++T IDLAG+ KY +TT+F +T   P   +L
Sbjct: 137 GNVVN----KPDSHGGSLEWTKICEKSSKVITFIDLAGHEKYLKTTVFGMTGHLPDFCML 192

Query: 700 VIPANHGFKGTSIDHWHLAITFGVPIAVVVTKIDRC 807
           ++ +N G  G + +H  LA+   VP+ VVVTKID C
Sbjct: 193 MVGSNAGIVGMTKEHLGLALALNVPVFVVVTKIDMC 228
>sp|O00178|GTPB1_HUMAN GTP-binding protein 1 (G-protein 1) (GP-1) (GP1)
          Length = 584

 Score =  161 bits (407), Expect = 3e-39
 Identities = 91/216 (42%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
 Frame = +1

Query: 166 NGKVTGLEPQELMESVMNLCKMAETLNASISVLRECHVGSRQALEILIRNVPTHFSTRET 345
           +G   GL   ++  S   +  MAE + A + +LRE      +  + L+R         E 
Sbjct: 17  DGTEYGLSEADMEASYATVKSMAEQIEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEV 76

Query: 346 RVAVLGNMDAGKSTLIGVLTQGVLDNGQGKTRLATFRHIHEVRSGRTSSISCQLLGFDKD 525
           RVAV+GN+DAGKSTL+GVLT G LDNG+G  R   FRH HE+ SGRTSS+   +LGFD +
Sbjct: 77  RVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSE 136

Query: 526 HNLFNFYWQKNRLHQRSHE--EVVLSSSKLVTLIDLAGYHKYQRTTLFALTARRPHLVLL 699
            N+ N    K   H  S E  ++   S+K++T IDLAG+ KY +TT+F +T   P   +L
Sbjct: 137 GNVVN----KPDSHGGSLEWTKICEKSTKVITFIDLAGHEKYLKTTVFGMTGHLPDFCML 192

Query: 700 VIPANHGFKGTSIDHWHLAITFGVPIAVVVTKIDRC 807
           ++ +N G  G + +H  LA+   VP+ VVVTKID C
Sbjct: 193 MVGSNAGIVGMTKEHLGLALALNVPVFVVVTKIDMC 228
>sp|Q5R8Q7|GTPB1_PONPY GTP-binding protein 1 (G-protein 1) (GP-1) (GP1)
          Length = 584

 Score =  161 bits (407), Expect = 3e-39
 Identities = 91/216 (42%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
 Frame = +1

Query: 166 NGKVTGLEPQELMESVMNLCKMAETLNASISVLRECHVGSRQALEILIRNVPTHFSTRET 345
           +G   GL   ++  S   +  MAE + A + +LRE      +  + L+R         E 
Sbjct: 17  DGTEYGLSEADMEASYATVKSMAEQIEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEV 76

Query: 346 RVAVLGNMDAGKSTLIGVLTQGVLDNGQGKTRLATFRHIHEVRSGRTSSISCQLLGFDKD 525
           RVAV+GN+DAGKSTL+GVLT G LDNG+G  R   FRH HE+ SGRTSS+   +LGFD +
Sbjct: 77  RVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSE 136

Query: 526 HNLFNFYWQKNRLHQRSHE--EVVLSSSKLVTLIDLAGYHKYQRTTLFALTARRPHLVLL 699
            N+ N    K   H  S E  ++   S+K++T IDLAG+ KY +TT+F +T   P   +L
Sbjct: 137 GNVVN----KPDSHGGSLEWTKICEKSTKVITFIDLAGHEKYLKTTVFGMTGHLPDFCML 192

Query: 700 VIPANHGFKGTSIDHWHLAITFGVPIAVVVTKIDRC 807
           ++ +N G  G + +H  LA+   VP+ VVVTKID C
Sbjct: 193 MVGSNAGIVGMTKEHLGLALALNVPVFVVVTKIDMC 228
>sp|Q18905|CGP1_CAEEL GTP-binding protein cgp-1
          Length = 613

 Score =  152 bits (385), Expect = 9e-37
 Identities = 93/215 (43%), Positives = 128/215 (59%), Gaps = 5/215 (2%)
 Frame = +1

Query: 178 TGLEPQELMESVMNLCKMAETLNA-SISVLRECHVGSRQAL-EI-LIRNVPTHFSTRETR 348
           +GL  ++L ++     K+ E + A    V+R    G      E+ +IR+ PT     E R
Sbjct: 83  SGLSEEDLDKAADAQLKILEKIPAVGTKVIRRKQTGGGSLFTEVWIIRDPPTEKDFIEAR 142

Query: 349 VAVLGNMDAGKSTLIGVLTQGVLDNGQGKTRLATFRHIHEVRSGRTSSISCQLLGFDKDH 528
           VAV+GN+DAGKSTL+GVLT   LD+G+G  R   FRH HE  SGRTSS+   +LGFD   
Sbjct: 143 VAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSVGNDILGFDVHG 202

Query: 529 NLFNFYWQKNRLHQRSHEEVVLSS--SKLVTLIDLAGYHKYQRTTLFALTARRPHLVLLV 702
           N+ N    K   H  + + V + S  +KLVT IDLAG+ KY +TT+F +T   P   +L+
Sbjct: 203 NIVN----KPDPHNHNLDWVQIGSDCAKLVTFIDLAGHEKYLKTTIFGMTGHMPDYTMLM 258

Query: 703 IPANHGFKGTSIDHWHLAITFGVPIAVVVTKIDRC 807
           I AN G  GT+ +H  LA++  VP+ +VVTKID C
Sbjct: 259 IGANMGIIGTTKEHLSLALSLHVPVYLVVTKIDMC 293
>sp|Q17045|AGP1_ASCSU GTP-binding protein AGP-1
          Length = 591

 Score =  147 bits (372), Expect = 3e-35
 Identities = 92/224 (41%), Positives = 127/224 (56%), Gaps = 2/224 (0%)
 Frame = +1

Query: 160 DDNGKVTGLEPQELMESVMNLCKMAETLNASISVLRECHVGSRQALEILIRNVPTHFSTR 339
           DD  K  GL  +EL  +     ++    N S S L     G       LIR+        
Sbjct: 79  DDTQK--GLSKEELQIAEERHKQLMNQSNISSSHLVTKRCGDLYTSFHLIRDSVDADDFI 136

Query: 340 ETRVAVLGNMDAGKSTLIGVLTQGVLDNGQGKTRLATFRHIHEVRSGRTSSISCQLLGFD 519
           E RVAV+GN+DAGKSTL+GVLT   LD+G+G+ R   FRH HE  SGRTSS+   +LGF 
Sbjct: 137 EVRVAVVGNVDAGKSTLLGVLTHSALDDGRGQARRKLFRHKHEFESGRTSSVGNDILGFS 196

Query: 520 KDHNLFNFYWQKNRLHQRSHEEVVL--SSSKLVTLIDLAGYHKYQRTTLFALTARRPHLV 693
            D  + N    K  +H  + + V +   S+K++T IDLAG+ KY +TT+F +T   P   
Sbjct: 197 MDGQIVN----KPDVHSGNLDWVSICRDSAKVITFIDLAGHEKYLKTTIFGMTGHAPDYT 252

Query: 694 LLVIPANHGFKGTSIDHWHLAITFGVPIAVVVTKIDRCQPDQAI 825
           +L++ +N G  G + +H  LA++  VP+ VVVTKID C PDQ +
Sbjct: 253 MLMVGSNAGIIGMTKEHLSLALSLSVPVFVVVTKIDMC-PDQVL 295
>sp|P44323|IF2_HAEIN Translation initiation factor IF-2
          Length = 829

 Score = 44.3 bits (103), Expect = 5e-04
 Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
 Frame = +1

Query: 196 ELMESVMNLCKMAETLNASISVLRECHVGSRQALEILIRNVPTHFSTRETRVAVLGNMD- 372
           E+++ +M + +M  T+N  I       V      ++++RN        E   AVLG+ D 
Sbjct: 270 EIIKMMMKMGEMV-TINQVIDQETAQLVAEELGHKVILRN------ENELEEAVLGDRDV 322

Query: 373 -AGKSTLIGVLT-QGVLDNGQGKTRLATFRHIHEVRSGRTSSISCQLLGFDKDHNLFNFY 546
            A K T   V+T  G +D+G  KT L  +    +V +G    I+  +  +          
Sbjct: 323 NAEKVTRAPVVTIMGHVDHG--KTSLLDYIRKAKVAAGEAGGITQHIGAY---------- 370

Query: 547 WQKNRLHQRSHEEVVLSSSKLVTLIDLAGYHKYQRTTLFALTARRPHLVLLVIPANHGFK 726
                        V +   K++T +D  G+  +  T++ A  A+   +V+LV+ A+ G  
Sbjct: 371 ------------HVEMDDGKMITFLDTPGHAAF--TSMRARGAKATDIVVLVVAADDGVM 416

Query: 727 GTSIDHWHLAITFGVPIAVVVTKIDR 804
             +I+    A   G P+ V V KID+
Sbjct: 417 PQTIEAIQHAKAAGAPLVVAVNKIDK 442
>sp|Q9ZCZ8|IF2_RICPR Translation initiation factor IF-2
          Length = 831

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 26/83 (31%), Positives = 46/83 (55%)
 Frame = +1

Query: 586 VVLSSSKLVTLIDLAGYHKYQRTTLFALTARRPHLVLLVIPANHGFKGTSIDHWHLAITF 765
           V L+ SK +T ID  G+  +    + +  A+   +V++V+ A+ G K  +++  + A   
Sbjct: 373 VTLADSKAITFIDTPGHEAFSE--MRSRGAKVTDIVIIVVAADDGIKTQTVEAINHAKAA 430

Query: 766 GVPIAVVVTKIDRCQPDQAINQL 834
           GVPI V + KID+  PD  I ++
Sbjct: 431 GVPIIVAINKIDK--PDIDIERI 451
>sp|P59587|IF2_ECOL6 Translation initiation factor IF-2
          Length = 890

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 5/218 (2%)
 Frame = +1

Query: 196 ELMESVMNLCKMAETLNASISVLRECHVGSRQALEILIRNVPTHFSTRETRVAVLGNMDA 375
           ++++++M L  MA T+N  I       V      ++++R         E   AV+ + D 
Sbjct: 331 QVIKAMMKLGAMA-TINQVIDQETAQLVAEEMGHKVILRR------ENELEEAVMSDRDT 383

Query: 376 GKST---LIGVLTQGVLDNGQGKTRLATFRHIHEVRSGRTSSISCQLLGFDKDHNLFNFY 546
           G +       V   G +D+G  KT L  +    +V SG    I+  +  +          
Sbjct: 384 GAAAEPRAPVVTIMGHVDHG--KTSLLDYIRSTKVASGEAGGITQHIGAYH--------- 432

Query: 547 WQKNRLHQRSHEEVVLSSSKLVTLIDLAGYHKYQRTTLFALTARRPHLVLLVIPANHGFK 726
                         V + + ++T +D  G+  +  T++ A  A+   +V+LV+ A+ G  
Sbjct: 433 --------------VETENGMITFLDTPGHAAF--TSMRARGAQATDIVVLVVAADDGVM 476

Query: 727 GTSIDHWHLAITFGVPIAVVVTKIDR--CQPDQAINQL 834
             +I+    A   GVP+ V V KID+    PD+  N+L
Sbjct: 477 PQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNEL 514
>sp|Q8Z3H7|IF2_SALTI Translation initiation factor IF-2
          Length = 892

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 5/218 (2%)
 Frame = +1

Query: 196 ELMESVMNLCKMAETLNASISVLRECHVGSRQALEILIRNVPTHFSTRETRVAVLGNMDA 375
           ++++++M L  MA T+N  I       V      ++++R         E   AV+ + D 
Sbjct: 333 QVIKAMMKLGAMA-TINQVIDQETAQLVAEEMGHKVILRR------ENELEEAVMSDRDT 385

Query: 376 GKST---LIGVLTQGVLDNGQGKTRLATFRHIHEVRSGRTSSISCQLLGFDKDHNLFNFY 546
           G +       V   G +D+G  KT L  +    +V SG    I+  +  +          
Sbjct: 386 GAAAEPRAPVVTIMGHVDHG--KTSLLDYIRSTKVASGEAGGITQHIGAYH--------- 434

Query: 547 WQKNRLHQRSHEEVVLSSSKLVTLIDLAGYHKYQRTTLFALTARRPHLVLLVIPANHGFK 726
                         V + + ++T +D  G+  +  T++ A  A+   +V+LV+ A+ G  
Sbjct: 435 --------------VETDNGMITFLDTPGHAAF--TSMRARGAQATDIVVLVVAADDGVM 478

Query: 727 GTSIDHWHLAITFGVPIAVVVTKIDR--CQPDQAINQL 834
             +I+    A   GVP+ V V KID+    PD+  N+L
Sbjct: 479 PQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNEL 516
>sp|Q9ZF31|IF2_SALTY Translation initiation factor IF-2
          Length = 892

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 5/218 (2%)
 Frame = +1

Query: 196 ELMESVMNLCKMAETLNASISVLRECHVGSRQALEILIRNVPTHFSTRETRVAVLGNMDA 375
           ++++++M L  MA T+N  I       V      ++++R         E   AV+ + D 
Sbjct: 333 QVIKAMMKLGAMA-TINQVIDQETAQLVAEEMGHKVILRR------ENELEEAVMSDRDT 385

Query: 376 GKST---LIGVLTQGVLDNGQGKTRLATFRHIHEVRSGRTSSISCQLLGFDKDHNLFNFY 546
           G +       V   G +D+G  KT L  +    +V SG    I+  +  +          
Sbjct: 386 GAAAEPRAPVVTIMGHVDHG--KTSLLDYIRSTKVASGEAGGITQHIGAYH--------- 434

Query: 547 WQKNRLHQRSHEEVVLSSSKLVTLIDLAGYHKYQRTTLFALTARRPHLVLLVIPANHGFK 726
                         V + + ++T +D  G+  +  T++ A  A+   +V+LV+ A+ G  
Sbjct: 435 --------------VETDNGMITFLDTPGHAAF--TSMRARGAQATDIVVLVVAADDGVM 478

Query: 727 GTSIDHWHLAITFGVPIAVVVTKIDR--CQPDQAINQL 834
             +I+    A   GVP+ V V KID+    PD+  N+L
Sbjct: 479 PQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNEL 516
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,328,919
Number of Sequences: 369166
Number of extensions: 1775461
Number of successful extensions: 5541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5523
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)