Planaria EST Database


DrC_01357

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01357
         (296 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LZ57|RL36C_ARATH  60S ribosomal protein L36-3                109   2e-24
sp|O80929|RL36A_ARATH  60S ribosomal protein L36-1                106   1e-23
sp|Q9M352|RL36B_ARATH  60S ribosomal protein L36-2                106   2e-23
sp|Q9Y3U8|RL36_HUMAN  60S ribosomal protein L36                   101   6e-22
sp|P39032|RL36_RAT  60S ribosomal protein L36                      99   3e-21
sp|P49181|RL36_CAEEL  60S ribosomal protein L36                    99   3e-21
sp|P49630|RL36_DROME  60S ribosomal protein L36 (Minute(1)1B...    96   3e-20
sp|P47964|RL36_MOUSE  60S ribosomal protein L36                    94   1e-19
sp|Q9LRB8|RL36_ENTCP  60S ribosomal protein L36                    92   4e-19
sp|Q9HFR7|RL36_TRIHM  60S ribosomal protein L36 (TRP36)            85   6e-17
>sp|Q9LZ57|RL36C_ARATH 60S ribosomal protein L36-3
          Length = 108

 Score =  109 bits (273), Expect = 2e-24
 Identities = 55/88 (62%), Positives = 66/88 (75%)
 Frame = -2

Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
           LNKGHVVTK  +  +P++ KGK S    F R+L+KE+ G APYEKRI ELLK+ KDKRAL
Sbjct: 10  LNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRAL 69

Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMR 23
           K AKR++G H RAKR RE MS V+R MR
Sbjct: 70  KVAKRKLGTHKRAKRKREEMSSVLRKMR 97
>sp|O80929|RL36A_ARATH 60S ribosomal protein L36-1
          Length = 113

 Score =  106 bits (265), Expect = 1e-23
 Identities = 53/88 (60%), Positives = 64/88 (72%)
 Frame = -2

Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
           LNKGHVVT+     +P+  KGK S    F R L++E+ G+APYEKRI ELLK+ KDKRAL
Sbjct: 14  LNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRAL 73

Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMR 23
           K AKR++G H RAKR RE MS V+R MR
Sbjct: 74  KVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>sp|Q9M352|RL36B_ARATH 60S ribosomal protein L36-2
          Length = 112

 Score =  106 bits (264), Expect = 2e-23
 Identities = 54/88 (61%), Positives = 63/88 (71%)
 Frame = -2

Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
           LNKGHVVT+     +P   KGK S    F R+L+KE+ G APYEKRI ELLK+ KDKRAL
Sbjct: 14  LNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRAL 73

Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMR 23
           K AKR++G H RAKR RE MS V+R MR
Sbjct: 74  KVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36
          Length = 105

 Score =  101 bits (251), Expect = 6e-22
 Identities = 48/89 (53%), Positives = 64/89 (71%)
 Frame = -2

Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
           LNKGH VTK   + + S  +G+ +   KF RD+++E+ G APYE+R +ELLK+ KDKRAL
Sbjct: 11  LNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL 70

Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
           KF K+R+G H RAKR RE +S V+  MRK
Sbjct: 71  KFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>sp|P39032|RL36_RAT 60S ribosomal protein L36
          Length = 105

 Score = 99.0 bits (245), Expect = 3e-21
 Identities = 47/89 (52%), Positives = 63/89 (70%)
 Frame = -2

Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
           LNKGH VTK   + + S  +G+ +   KF RD+++E+   APYE+R +ELLK+ KDKRAL
Sbjct: 11  LNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRAL 70

Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
           KF K+R+G H RAKR RE +S V+  MRK
Sbjct: 71  KFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>sp|P49181|RL36_CAEEL 60S ribosomal protein L36
          Length = 104

 Score = 99.0 bits (245), Expect = 3e-21
 Identities = 47/89 (52%), Positives = 61/89 (68%)
 Frame = -2

Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
           LNKGH  T+LP + + +  KG  S   K  R+LV+E+ G APYE+R++E+L+I KDKRAL
Sbjct: 13  LNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRAL 72

Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
           KF KRRIG H RAK  RE +  V+   RK
Sbjct: 73  KFLKRRIGTHRRAKGKREELQNVIIAQRK 101
>sp|P49630|RL36_DROME 60S ribosomal protein L36 (Minute(1)1B protein)
          Length = 115

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 51/99 (51%), Positives = 65/99 (65%), Gaps = 10/99 (10%)
 Frame = -2

Query: 286 LNKGHVVTKLP----------KRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIEL 137
           LNKGH  +K+           K ++ S  K  Q+   KF RDLV+E+VG APYEKR +EL
Sbjct: 11  LNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMEL 70

Query: 136 LKIQKDKRALKFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
           LK+ KDKRALKF KRR+G H RAKR RE +S ++  +RK
Sbjct: 71  LKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRK 109
>sp|P47964|RL36_MOUSE 60S ribosomal protein L36
          Length = 105

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 44/89 (49%), Positives = 62/89 (69%)
 Frame = -2

Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
           LNKGH VTK   + + S  + + ++  KF RD+++E+ G APYE+R +ELLK+ K KRAL
Sbjct: 11  LNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRAL 70

Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
           KF K+R+G H RAKR RE +S V+  M +
Sbjct: 71  KFIKKRVGTHIRAKRKREELSNVLAAMEE 99
>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36
          Length = 101

 Score = 92.0 bits (227), Expect = 4e-19
 Identities = 46/88 (52%), Positives = 60/88 (68%)
 Frame = -2

Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
           LNKGH VTK     +PS  KG  S   K  R +V+E+ G APYE+R++ELLK+ KDKRAL
Sbjct: 8   LNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRAL 67

Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMR 23
           K  KR++G H R K+ RE M+ V+R M+
Sbjct: 68  KMCKRKLGTHMRGKKKREEMAGVLRKMQ 95
>sp|Q9HFR7|RL36_TRIHM 60S ribosomal protein L36 (TRP36)
          Length = 105

 Score = 84.7 bits (208), Expect = 6e-17
 Identities = 42/89 (47%), Positives = 58/89 (65%)
 Frame = -2

Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
           LNKGH  T    + + S +KG  S    F R++VKE+ GLAPYE+R+IELL+  KDKRA 
Sbjct: 15  LNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRAR 74

Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
           K AK+R+G   RAKR  + + +V+   R+
Sbjct: 75  KLAKKRLGTFGRAKRKVDELQRVIAESRR 103
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,394,553
Number of Sequences: 369166
Number of extensions: 570439
Number of successful extensions: 1580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)