Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_M12
(296 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LZ57|RL36C_ARATH 60S ribosomal protein L36-3 109 2e-24
sp|O80929|RL36A_ARATH 60S ribosomal protein L36-1 106 1e-23
sp|Q9M352|RL36B_ARATH 60S ribosomal protein L36-2 106 2e-23
sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36 101 6e-22
sp|P39032|RL36_RAT 60S ribosomal protein L36 99 3e-21
sp|P49181|RL36_CAEEL 60S ribosomal protein L36 99 3e-21
sp|P49630|RL36_DROME 60S ribosomal protein L36 (Minute(1)1B... 96 3e-20
sp|P47964|RL36_MOUSE 60S ribosomal protein L36 94 1e-19
sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 92 4e-19
sp|Q9HFR7|RL36_TRIHM 60S ribosomal protein L36 (TRP36) 85 6e-17
>sp|Q9LZ57|RL36C_ARATH 60S ribosomal protein L36-3
Length = 108
Score = 109 bits (273), Expect = 2e-24
Identities = 55/88 (62%), Positives = 66/88 (75%)
Frame = -2
Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
LNKGHVVTK + +P++ KGK S F R+L+KE+ G APYEKRI ELLK+ KDKRAL
Sbjct: 10 LNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRAL 69
Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMR 23
K AKR++G H RAKR RE MS V+R MR
Sbjct: 70 KVAKRKLGTHKRAKRKREEMSSVLRKMR 97
>sp|O80929|RL36A_ARATH 60S ribosomal protein L36-1
Length = 113
Score = 106 bits (265), Expect = 1e-23
Identities = 53/88 (60%), Positives = 64/88 (72%)
Frame = -2
Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
LNKGHVVT+ +P+ KGK S F R L++E+ G+APYEKRI ELLK+ KDKRAL
Sbjct: 14 LNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRAL 73
Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMR 23
K AKR++G H RAKR RE MS V+R MR
Sbjct: 74 KVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>sp|Q9M352|RL36B_ARATH 60S ribosomal protein L36-2
Length = 112
Score = 106 bits (264), Expect = 2e-23
Identities = 54/88 (61%), Positives = 63/88 (71%)
Frame = -2
Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
LNKGHVVT+ +P KGK S F R+L+KE+ G APYEKRI ELLK+ KDKRAL
Sbjct: 14 LNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRAL 73
Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMR 23
K AKR++G H RAKR RE MS V+R MR
Sbjct: 74 KVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>sp|Q9Y3U8|RL36_HUMAN 60S ribosomal protein L36
Length = 105
Score = 101 bits (251), Expect = 6e-22
Identities = 48/89 (53%), Positives = 64/89 (71%)
Frame = -2
Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
LNKGH VTK + + S +G+ + KF RD+++E+ G APYE+R +ELLK+ KDKRAL
Sbjct: 11 LNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRAL 70
Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
KF K+R+G H RAKR RE +S V+ MRK
Sbjct: 71 KFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>sp|P39032|RL36_RAT 60S ribosomal protein L36
Length = 105
Score = 99.0 bits (245), Expect = 3e-21
Identities = 47/89 (52%), Positives = 63/89 (70%)
Frame = -2
Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
LNKGH VTK + + S +G+ + KF RD+++E+ APYE+R +ELLK+ KDKRAL
Sbjct: 11 LNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRAL 70
Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
KF K+R+G H RAKR RE +S V+ MRK
Sbjct: 71 KFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>sp|P49181|RL36_CAEEL 60S ribosomal protein L36
Length = 104
Score = 99.0 bits (245), Expect = 3e-21
Identities = 47/89 (52%), Positives = 61/89 (68%)
Frame = -2
Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
LNKGH T+LP + + + KG S K R+LV+E+ G APYE+R++E+L+I KDKRAL
Sbjct: 13 LNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRAL 72
Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
KF KRRIG H RAK RE + V+ RK
Sbjct: 73 KFLKRRIGTHRRAKGKREELQNVIIAQRK 101
>sp|P49630|RL36_DROME 60S ribosomal protein L36 (Minute(1)1B protein)
Length = 115
Score = 95.5 bits (236), Expect = 3e-20
Identities = 51/99 (51%), Positives = 65/99 (65%), Gaps = 10/99 (10%)
Frame = -2
Query: 286 LNKGHVVTKLP----------KRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIEL 137
LNKGH +K+ K ++ S K Q+ KF RDLV+E+VG APYEKR +EL
Sbjct: 11 LNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKRTMEL 70
Query: 136 LKIQKDKRALKFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
LK+ KDKRALKF KRR+G H RAKR RE +S ++ +RK
Sbjct: 71 LKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLRK 109
>sp|P47964|RL36_MOUSE 60S ribosomal protein L36
Length = 105
Score = 93.6 bits (231), Expect = 1e-19
Identities = 44/89 (49%), Positives = 62/89 (69%)
Frame = -2
Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
LNKGH VTK + + S + + ++ KF RD+++E+ G APYE+R +ELLK+ K KRAL
Sbjct: 11 LNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRAL 70
Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
KF K+R+G H RAKR RE +S V+ M +
Sbjct: 71 KFIKKRVGTHIRAKRKREELSNVLAAMEE 99
>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36
Length = 101
Score = 92.0 bits (227), Expect = 4e-19
Identities = 46/88 (52%), Positives = 60/88 (68%)
Frame = -2
Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
LNKGH VTK +PS KG S K R +V+E+ G APYE+R++ELLK+ KDKRAL
Sbjct: 8 LNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRAL 67
Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMR 23
K KR++G H R K+ RE M+ V+R M+
Sbjct: 68 KMCKRKLGTHMRGKKKREEMAGVLRKMQ 95
>sp|Q9HFR7|RL36_TRIHM 60S ribosomal protein L36 (TRP36)
Length = 105
Score = 84.7 bits (208), Expect = 6e-17
Identities = 42/89 (47%), Positives = 58/89 (65%)
Frame = -2
Query: 286 LNKGHVVTKLPKRVKPSHSKGKQSSSAKFCRDLVKEMVGLAPYEKRIIELLKIQKDKRAL 107
LNKGH T + + S +KG S F R++VKE+ GLAPYE+R+IELL+ KDKRA
Sbjct: 15 LNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRAR 74
Query: 106 KFAKRRIGGHSRAKRVRENMSKVVRNMRK 20
K AK+R+G RAKR + + +V+ R+
Sbjct: 75 KLAKKRLGTFGRAKRKVDELQRVIAESRR 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,394,553
Number of Sequences: 369166
Number of extensions: 570439
Number of successful extensions: 1580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)