Planaria EST Database


DrC_01354

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01354
         (841 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03701|CEBPZ_HUMAN  CCAAT/enhancer binding protein zeta (...   117   4e-26
sp|P53569|CEBPZ_MOUSE  CCAAT/enhancer binding protein zeta (...   111   2e-24
sp|Q19753|YU0O_CAEEL  Hypothetical protein F23B12.7 in chrom...    81   4e-15
sp|O36021|YEK9_SCHPO  Hypothetical protein C4F10.09c in chro...    80   7e-15
sp|Q12176|MAK21_YEAST  Ribosome biogenesis protein MAK21 (Nu...    58   3e-08
sp|Q5XGZ8|NOC3L_XENLA  Nucleolar complex protein 3 homolog (...    36   0.12 
sp|Q9VI82|NOC3L_DROME  Nucleolar complex protein 3 homolog (...    36   0.15 
sp|Q8BGA5|HRB2_MOUSE  HIV-1 Rev-binding protein 2 homolog          35   0.20 
sp|Q8VI84|NOC3L_MOUSE  Nucleolar complex protein 3 homolog (...    35   0.26 
sp|Q6DRN3|NOC3L_BRARE  Nucleolar complex protein 3 homolog (...    35   0.26 
>sp|Q03701|CEBPZ_HUMAN CCAAT/enhancer binding protein zeta (CCAAT-box-binding transcription
            factor) (CCAAT-binding factor) (CBF)
          Length = 998

 Score =  117 bits (293), Expect = 4e-26
 Identities = 57/140 (40%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
 Frame = +3

Query: 81   SWFHYNNIKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKILNME 260
            SW H++N+K  G+    YDPF+RNP +   +   L EL  L  H+HPSV +F + IL   
Sbjct: 680  SWVHFDNLKG-GKQLNKYDPFSRNPLFCGAENTSLWELKKLSVHFHPSVALFAKTILQGN 738

Query: 261  KIVYKTDPSEDMSLSKFLDRFAYKNPKKVEDKRK----YLQKPAMNATDEIRQIPVNGKE 428
             I Y  DP +D +L +FLDRF Y+NPK  + K       +Q    +   +IR +PVN KE
Sbjct: 739  YIQYSGDPLQDFTLMRFLDRFVYRNPKPHKGKENTDSVVMQPKRKHFIKDIRHLPVNSKE 798

Query: 429  FVNLSEEKVPQDQLFFHKYF 488
            F+   E ++P D++FFH+Y+
Sbjct: 799  FLAKEESQIPVDEVFFHRYY 818
>sp|P53569|CEBPZ_MOUSE CCAAT/enhancer binding protein zeta (CCAAT-box-binding transcription
            factor) (CCAAT-binding factor) (CBF)
          Length = 997

 Score =  111 bits (278), Expect = 2e-24
 Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
 Frame = +3

Query: 81   SWFHYNNIKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKILNME 260
            SW H++N+K   + +T YDPF+RNP +   +   L EL  L  H+HPSV +F + IL   
Sbjct: 681  SWVHFDNLKGGKQIKT-YDPFSRNPLFCGAENTTLWELKKLSEHFHPSVALFAKTILEGN 739

Query: 261  KIVYKTDPSEDMSLSKFLDRFAYKNPKKVEDKRK----YLQKPAMNATDEIRQIPVNGKE 428
             I Y  DP +D +L +FLDRF Y+NPK  + K       +Q    +    +R + VN KE
Sbjct: 740  CIQYSGDPLQDFTLMRFLDRFVYRNPKLHKGKENTDSVVMQPKRKHFMKNVRDLAVNSKE 799

Query: 429  FVNLSEEKVPQDQLFFHKYF 488
            F+   E ++P D++FF++Y+
Sbjct: 800  FLAKEESQIPVDEVFFYRYY 819
>sp|Q19753|YU0O_CAEEL Hypothetical protein F23B12.7 in chromosome V
          Length = 953

 Score = 80.9 bits (198), Expect = 4e-15
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
 Frame = +3

Query: 84   WFHYNNIKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKILNMEK 263
            W H  +I + G ++T YD  ARNP +         EL  L  HYHPSV +F + ++   +
Sbjct: 617  WVH-RSIGARG-AKTPYDSVARNPLFVDASHTADSELLLLSKHYHPSVAVFAKALMEGRE 674

Query: 264  IVYKTDPSEDMSLSKFLDRFAYKNPKKVEDK--RKYLQKPAMNATDEIRQIPVNGKEFVN 437
            I Y  +   D +L  FLDRFA++NPK V      + ++K A +    +R++ V   E+  
Sbjct: 675  INYGGEALNDFTLMAFLDRFAFRNPKDVTKTTGTRIVRKKAHDPWG-VRKLAVGSNEYTQ 733

Query: 438  LSEEKVPQDQLFFHKY 485
               E++P D+ F H+Y
Sbjct: 734  KRREEIPADERFLHRY 749
>sp|O36021|YEK9_SCHPO Hypothetical protein C4F10.09c in chromosome I
          Length = 860

 Score = 80.1 bits (196), Expect = 7e-15
 Identities = 45/140 (32%), Positives = 81/140 (57%), Gaps = 9/140 (6%)
 Frame = +3

Query: 99  NIKSSGESETI-YDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKILNMEKIVYK 275
           N+  S + E + YD   R+P+Y++ D   L E+    NH+HP+V +  + ++  EKI+ K
Sbjct: 561 NVSVSTKKEHLSYDGRKRDPQYSNADGSCLWEIHPFLNHFHPTVSLLAKSLVYGEKILGK 620

Query: 276 TDPSEDMSLSKFLDRFAYKNPKKVEDKRKY-LQKPAMNATDE-------IRQIPVNGKEF 431
            + S   +L+ FLD+FAY+NPKK    R + + +P      +          +P+N ++F
Sbjct: 621 PNLSLH-TLNHFLDKFAYRNPKKSAAARGHSIMQPLAGGLSKGYVPGSTYSGVPMNSEQF 679

Query: 432 VNLSEEKVPQDQLFFHKYFN 491
            +  +E++P D+LFF+++FN
Sbjct: 680 TSKKQEEIPVDELFFYRFFN 699
>sp|Q12176|MAK21_YEAST Ribosome biogenesis protein MAK21 (Nucleolar complex protein 1)
          Length = 1025

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
 Frame = +3

Query: 132  YDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKILNMEKIVYKTDPSEDMSLSKF 311
            YD   R+PK+A+ +K  L E++   NH+HP+V+ +    +  E            +LS F
Sbjct: 726  YDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTYANAYVTGETEQIAKPDLGLFTLSHF 785

Query: 312  LDRFAYKNPKKVEDKR------------KYLQKPAMNATDEIR-QIPVNGKEFVNLSEEK 452
            LDRF Y++ K+    R            +      + A+D +  Q PVN ++++    E 
Sbjct: 786  LDRFVYRSAKQTNTARGTSIMQPLFSGSRVNDSVLVKASDIMHDQGPVNTEDWLTKKVED 845

Query: 453  VPQDQLFFHKYF 488
            +  +  FF++YF
Sbjct: 846  IKPEDKFFYQYF 857
>sp|Q5XGZ8|NOC3L_XENLA Nucleolar complex protein 3 homolog (NOC3 protein homolog)
           (NOC3-like protein) (Nucleolar complex-associated
           protein 3-like protein)
          Length = 795

 Score = 36.2 bits (82), Expect = 0.12
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 102 IKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIF 236
           + S  +   IY P    P+Y +     L EL  L  HYHP V+IF
Sbjct: 661 LDSDSQGSGIYLPELDEPEYCNAQNSALWELHTLMRHYHPVVQIF 705
>sp|Q9VI82|NOC3L_DROME Nucleolar complex protein 3 homolog (NOC3 protein homolog)
           (NOC3-like protein) (Nucleolar complex-associated
           protein 3-like protein)
          Length = 822

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 132 YDPFARNPKYAHVDKEGLIELDFLKNHYHPSVR 230
           YDP   +P+Y +     L EL  L  HYHP+VR
Sbjct: 692 YDPELDDPEYCNAASTALYELALLARHYHPTVR 724
>sp|Q8BGA5|HRB2_MOUSE HIV-1 Rev-binding protein 2 homolog
          Length = 380

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
 Frame = +3

Query: 186 IELDFLKNHYHPSVRIFVEKILNMEKIVYKTDPSEDMSLSKFLDRFAYKN------PKKV 347
           + LD +KN  HP   I   K L +++ + K       S  +FL +F +KN      PKK 
Sbjct: 204 VVLDTMKN-IHPIYNI---KTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKK 259

Query: 348 EDKRKYLQKPAMNATDEIRQIPVNGKEFVNLSEEK 452
             K++Y   P      +I +   +G+ F+  S++K
Sbjct: 260 SVKKEYTPFPPPQPESQIDKELASGEYFLKASQKK 294
>sp|Q8VI84|NOC3L_MOUSE Nucleolar complex protein 3 homolog (NOC3 protein homolog)
           (NOC3-like protein) (Nucleolar complex-associated
           protein 3-like protein) (Factor for adipocyte
           differentiation 24)
          Length = 807

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 102 IKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKIL 251
           + +  +   ++ P    P+Y +     L EL  L+ HYHP VR F   +L
Sbjct: 662 LDNESQGSGVFLPELEEPEYCNAQNTALWELHTLRRHYHPIVRRFAAHLL 711
>sp|Q6DRN3|NOC3L_BRARE Nucleolar complex protein 3 homolog (NOC3 protein homolog)
           (NOC3-like protein) (Nucleolar complex-associated
           protein 3-like protein)
          Length = 800

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 96  NNIKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKIL 251
           N  + SG    +Y P    P+Y +     L EL  LK+HYHP VR F   ++
Sbjct: 665 NETQGSG----VYLPELDVPEYCNPQNTALWELHLLKSHYHPVVRKFAAHLM 712
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,945,733
Number of Sequences: 369166
Number of extensions: 1495345
Number of successful extensions: 4469
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4461
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)