Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_L17
(841 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03701|CEBPZ_HUMAN CCAAT/enhancer binding protein zeta (... 117 4e-26
sp|P53569|CEBPZ_MOUSE CCAAT/enhancer binding protein zeta (... 111 2e-24
sp|Q19753|YU0O_CAEEL Hypothetical protein F23B12.7 in chrom... 81 4e-15
sp|O36021|YEK9_SCHPO Hypothetical protein C4F10.09c in chro... 80 7e-15
sp|Q12176|MAK21_YEAST Ribosome biogenesis protein MAK21 (Nu... 58 3e-08
sp|Q5XGZ8|NOC3L_XENLA Nucleolar complex protein 3 homolog (... 36 0.12
sp|Q9VI82|NOC3L_DROME Nucleolar complex protein 3 homolog (... 36 0.15
sp|Q8BGA5|HRB2_MOUSE HIV-1 Rev-binding protein 2 homolog 35 0.20
sp|Q8VI84|NOC3L_MOUSE Nucleolar complex protein 3 homolog (... 35 0.26
sp|Q6DRN3|NOC3L_BRARE Nucleolar complex protein 3 homolog (... 35 0.26
>sp|Q03701|CEBPZ_HUMAN CCAAT/enhancer binding protein zeta (CCAAT-box-binding transcription
factor) (CCAAT-binding factor) (CBF)
Length = 998
Score = 117 bits (293), Expect = 4e-26
Identities = 57/140 (40%), Positives = 83/140 (59%), Gaps = 4/140 (2%)
Frame = +3
Query: 81 SWFHYNNIKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKILNME 260
SW H++N+K G+ YDPF+RNP + + L EL L H+HPSV +F + IL
Sbjct: 680 SWVHFDNLKG-GKQLNKYDPFSRNPLFCGAENTSLWELKKLSVHFHPSVALFAKTILQGN 738
Query: 261 KIVYKTDPSEDMSLSKFLDRFAYKNPKKVEDKRK----YLQKPAMNATDEIRQIPVNGKE 428
I Y DP +D +L +FLDRF Y+NPK + K +Q + +IR +PVN KE
Sbjct: 739 YIQYSGDPLQDFTLMRFLDRFVYRNPKPHKGKENTDSVVMQPKRKHFIKDIRHLPVNSKE 798
Query: 429 FVNLSEEKVPQDQLFFHKYF 488
F+ E ++P D++FFH+Y+
Sbjct: 799 FLAKEESQIPVDEVFFHRYY 818
>sp|P53569|CEBPZ_MOUSE CCAAT/enhancer binding protein zeta (CCAAT-box-binding transcription
factor) (CCAAT-binding factor) (CBF)
Length = 997
Score = 111 bits (278), Expect = 2e-24
Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 4/140 (2%)
Frame = +3
Query: 81 SWFHYNNIKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKILNME 260
SW H++N+K + +T YDPF+RNP + + L EL L H+HPSV +F + IL
Sbjct: 681 SWVHFDNLKGGKQIKT-YDPFSRNPLFCGAENTTLWELKKLSEHFHPSVALFAKTILEGN 739
Query: 261 KIVYKTDPSEDMSLSKFLDRFAYKNPKKVEDKRK----YLQKPAMNATDEIRQIPVNGKE 428
I Y DP +D +L +FLDRF Y+NPK + K +Q + +R + VN KE
Sbjct: 740 CIQYSGDPLQDFTLMRFLDRFVYRNPKLHKGKENTDSVVMQPKRKHFMKNVRDLAVNSKE 799
Query: 429 FVNLSEEKVPQDQLFFHKYF 488
F+ E ++P D++FF++Y+
Sbjct: 800 FLAKEESQIPVDEVFFYRYY 819
>sp|Q19753|YU0O_CAEEL Hypothetical protein F23B12.7 in chromosome V
Length = 953
Score = 80.9 bits (198), Expect = 4e-15
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Frame = +3
Query: 84 WFHYNNIKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKILNMEK 263
W H +I + G ++T YD ARNP + EL L HYHPSV +F + ++ +
Sbjct: 617 WVH-RSIGARG-AKTPYDSVARNPLFVDASHTADSELLLLSKHYHPSVAVFAKALMEGRE 674
Query: 264 IVYKTDPSEDMSLSKFLDRFAYKNPKKVEDK--RKYLQKPAMNATDEIRQIPVNGKEFVN 437
I Y + D +L FLDRFA++NPK V + ++K A + +R++ V E+
Sbjct: 675 INYGGEALNDFTLMAFLDRFAFRNPKDVTKTTGTRIVRKKAHDPWG-VRKLAVGSNEYTQ 733
Query: 438 LSEEKVPQDQLFFHKY 485
E++P D+ F H+Y
Sbjct: 734 KRREEIPADERFLHRY 749
>sp|O36021|YEK9_SCHPO Hypothetical protein C4F10.09c in chromosome I
Length = 860
Score = 80.1 bits (196), Expect = 7e-15
Identities = 45/140 (32%), Positives = 81/140 (57%), Gaps = 9/140 (6%)
Frame = +3
Query: 99 NIKSSGESETI-YDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKILNMEKIVYK 275
N+ S + E + YD R+P+Y++ D L E+ NH+HP+V + + ++ EKI+ K
Sbjct: 561 NVSVSTKKEHLSYDGRKRDPQYSNADGSCLWEIHPFLNHFHPTVSLLAKSLVYGEKILGK 620
Query: 276 TDPSEDMSLSKFLDRFAYKNPKKVEDKRKY-LQKPAMNATDE-------IRQIPVNGKEF 431
+ S +L+ FLD+FAY+NPKK R + + +P + +P+N ++F
Sbjct: 621 PNLSLH-TLNHFLDKFAYRNPKKSAAARGHSIMQPLAGGLSKGYVPGSTYSGVPMNSEQF 679
Query: 432 VNLSEEKVPQDQLFFHKYFN 491
+ +E++P D+LFF+++FN
Sbjct: 680 TSKKQEEIPVDELFFYRFFN 699
>sp|Q12176|MAK21_YEAST Ribosome biogenesis protein MAK21 (Nucleolar complex protein 1)
Length = 1025
Score = 58.2 bits (139), Expect = 3e-08
Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Frame = +3
Query: 132 YDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKILNMEKIVYKTDPSEDMSLSKF 311
YD R+PK+A+ +K L E++ NH+HP+V+ + + E +LS F
Sbjct: 726 YDGRKRDPKFANAEKSSLWEINNFINHFHPTVKTYANAYVTGETEQIAKPDLGLFTLSHF 785
Query: 312 LDRFAYKNPKKVEDKR------------KYLQKPAMNATDEIR-QIPVNGKEFVNLSEEK 452
LDRF Y++ K+ R + + A+D + Q PVN ++++ E
Sbjct: 786 LDRFVYRSAKQTNTARGTSIMQPLFSGSRVNDSVLVKASDIMHDQGPVNTEDWLTKKVED 845
Query: 453 VPQDQLFFHKYF 488
+ + FF++YF
Sbjct: 846 IKPEDKFFYQYF 857
>sp|Q5XGZ8|NOC3L_XENLA Nucleolar complex protein 3 homolog (NOC3 protein homolog)
(NOC3-like protein) (Nucleolar complex-associated
protein 3-like protein)
Length = 795
Score = 36.2 bits (82), Expect = 0.12
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 102 IKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIF 236
+ S + IY P P+Y + L EL L HYHP V+IF
Sbjct: 661 LDSDSQGSGIYLPELDEPEYCNAQNSALWELHTLMRHYHPVVQIF 705
>sp|Q9VI82|NOC3L_DROME Nucleolar complex protein 3 homolog (NOC3 protein homolog)
(NOC3-like protein) (Nucleolar complex-associated
protein 3-like protein)
Length = 822
Score = 35.8 bits (81), Expect = 0.15
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 132 YDPFARNPKYAHVDKEGLIELDFLKNHYHPSVR 230
YDP +P+Y + L EL L HYHP+VR
Sbjct: 692 YDPELDDPEYCNAASTALYELALLARHYHPTVR 724
>sp|Q8BGA5|HRB2_MOUSE HIV-1 Rev-binding protein 2 homolog
Length = 380
Score = 35.4 bits (80), Expect = 0.20
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Frame = +3
Query: 186 IELDFLKNHYHPSVRIFVEKILNMEKIVYKTDPSEDMSLSKFLDRFAYKN------PKKV 347
+ LD +KN HP I K L +++ + K S +FL +F +KN PKK
Sbjct: 204 VVLDTMKN-IHPIYNI---KTLMIKRELAKDSELRSQSWERFLPQFKHKNVNKRKEPKKK 259
Query: 348 EDKRKYLQKPAMNATDEIRQIPVNGKEFVNLSEEK 452
K++Y P +I + +G+ F+ S++K
Sbjct: 260 SVKKEYTPFPPPQPESQIDKELASGEYFLKASQKK 294
>sp|Q8VI84|NOC3L_MOUSE Nucleolar complex protein 3 homolog (NOC3 protein homolog)
(NOC3-like protein) (Nucleolar complex-associated
protein 3-like protein) (Factor for adipocyte
differentiation 24)
Length = 807
Score = 35.0 bits (79), Expect = 0.26
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 102 IKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKIL 251
+ + + ++ P P+Y + L EL L+ HYHP VR F +L
Sbjct: 662 LDNESQGSGVFLPELEEPEYCNAQNTALWELHTLRRHYHPIVRRFAAHLL 711
>sp|Q6DRN3|NOC3L_BRARE Nucleolar complex protein 3 homolog (NOC3 protein homolog)
(NOC3-like protein) (Nucleolar complex-associated
protein 3-like protein)
Length = 800
Score = 35.0 bits (79), Expect = 0.26
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +3
Query: 96 NNIKSSGESETIYDPFARNPKYAHVDKEGLIELDFLKNHYHPSVRIFVEKIL 251
N + SG +Y P P+Y + L EL LK+HYHP VR F ++
Sbjct: 665 NETQGSG----VYLPELDVPEYCNPQNTALWELHLLKSHYHPVVRKFAAHLM 712
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,945,733
Number of Sequences: 369166
Number of extensions: 1495345
Number of successful extensions: 4469
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4461
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)