Planaria EST Database


DrC_01353

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01353
         (705 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13200|PSD2_HUMAN  26S proteasome non-ATPase regulatory s...   278   1e-74
sp|Q8VDM4|PSD2_MOUSE  26S proteasome non-ATPase regulatory s...   278   1e-74
sp|Q7S8R8|RPN1_NEUCR  26S proteasome regulatory subunit rpn-1     238   1e-62
sp|P87048|RPN1_SCHPO  26S proteasome regulatory subunit rpn1...   214   1e-55
sp|P38764|RPN1_YEAST  26S proteasome regulatory subunit RPN1...   191   2e-48
sp|Q6FPV6|RPN1_CANGA  26S proteasome regulatory subunit RPN1      188   1e-47
sp|O95704|ABB3_HUMAN  Amyloid beta A4 precursor protein-bind...    30   6.2  
sp|P55931|ETFD_PIG  Electron transfer flavoprotein-ubiquinon...    30   8.2  
>sp|Q13200|PSD2_HUMAN 26S proteasome non-ATPase regulatory subunit 2 (26S proteasome
            regulatory subunit RPN1) (26S proteasome regulatory
            subunit S2) (26S proteasome subunit p97) (Tumor necrosis
            factor type 1 receptor associated protein 2) (55.11
            protein)
          Length = 908

 Score =  278 bits (711), Expect = 1e-74
 Identities = 137/197 (69%), Positives = 168/197 (85%)
 Frame = +1

Query: 1    KFSHDSDQELAFTAILSMGLVGAGTNNARLAAMLRQLASFHSKDPHCLFAVRLAQGLLHL 180
            KFSHD+D E+++ +I +MG+VG+GTNNARLAAMLRQLA +H+KDP+ LF VRLAQGL HL
Sbjct: 712  KFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHL 771

Query: 181  GKGTLTISPHHQDRFLMSPVAVGGLLTVLISCLDVKRTFMNRNDYLLFYLTSAFQPRLLM 360
            GKGTLT+ P+H DR LMS VAV GLLTVL+S LDV+   + ++ Y+L+ L +A QPR+L+
Sbjct: 772  GKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLV 831

Query: 361  TFDEALHPLTVTVRVGQGVDTVGQAGRPKTITGFQTHTTPVLLAAGERAELSTEEYLPVT 540
            TFDE L PL V+VRVGQ VD VGQAG+PKTITGFQTHTTPVLLA GERAEL+TEE+LPVT
Sbjct: 832  TFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVT 891

Query: 541  QLPLEGFVILKKNPHYE 591
             + LEGFVIL+KNP+Y+
Sbjct: 892  PI-LEGFVILRKNPNYD 907
>sp|Q8VDM4|PSD2_MOUSE 26S proteasome non-ATPase regulatory subunit 2 (26S proteasome
            regulatory subunit RPN1) (26S proteasome regulatory
            subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score =  278 bits (711), Expect = 1e-74
 Identities = 137/197 (69%), Positives = 168/197 (85%)
 Frame = +1

Query: 1    KFSHDSDQELAFTAILSMGLVGAGTNNARLAAMLRQLASFHSKDPHCLFAVRLAQGLLHL 180
            KFSHD+D E+++ +I +MG+VG+GTNNARLAAMLRQLA +H+KDP+ LF VRLAQGL HL
Sbjct: 712  KFSHDADPEVSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHL 771

Query: 181  GKGTLTISPHHQDRFLMSPVAVGGLLTVLISCLDVKRTFMNRNDYLLFYLTSAFQPRLLM 360
            GKGTLT+ P+H DR LMS VAV GLLTVL+S LDV+   + ++ Y+L+ L +A QPR+L+
Sbjct: 772  GKGTLTLCPYHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLV 831

Query: 361  TFDEALHPLTVTVRVGQGVDTVGQAGRPKTITGFQTHTTPVLLAAGERAELSTEEYLPVT 540
            TFDE L PL V+VRVGQ VD VGQAG+PKTITGFQTHTTPVLLA GERAEL+TEE+LPVT
Sbjct: 832  TFDEELRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVT 891

Query: 541  QLPLEGFVILKKNPHYE 591
             + LEGFVIL+KNP+Y+
Sbjct: 892  PI-LEGFVILRKNPNYD 907
>sp|Q7S8R8|RPN1_NEUCR 26S proteasome regulatory subunit rpn-1
          Length = 883

 Score =  238 bits (607), Expect = 1e-62
 Identities = 116/197 (58%), Positives = 154/197 (78%)
 Frame = +1

Query: 1    KFSHDSDQELAFTAILSMGLVGAGTNNARLAAMLRQLASFHSKDPHCLFAVRLAQGLLHL 180
            ++SHD+D E+A  AI +MGL+GAGTNNARLA +LRQLAS++ +D   LF VR+AQGLLH+
Sbjct: 685  RYSHDNDNEVAINAIFAMGLLGAGTNNARLAQLLRQLASYYHRDQESLFMVRIAQGLLHM 744

Query: 181  GKGTLTISPHHQDRFLMSPVAVGGLLTVLISCLDVKRTFMNRNDYLLFYLTSAFQPRLLM 360
            GKGTL++SP H DR ++S VA  GLL VL++ +D K+   +++ YLL+++ +A  PR+L+
Sbjct: 745  GKGTLSVSPFHTDRQVLSNVATAGLLAVLVAMIDAKQFITSKSHYLLYWIVTAMHPRMLV 804

Query: 361  TFDEALHPLTVTVRVGQGVDTVGQAGRPKTITGFQTHTTPVLLAAGERAELSTEEYLPVT 540
            T DE L PLTV VRVGQ VD VGQAGRPKTITG+QT +TPVLL  GERAEL  ++Y+ ++
Sbjct: 805  TLDEDLKPLTVNVRVGQAVDVVGQAGRPKTITGWQTQSTPVLLGYGERAELEDDQYISLS 864

Query: 541  QLPLEGFVILKKNPHYE 591
               LEG VIL+KNP +E
Sbjct: 865  S-TLEGLVILRKNPDWE 880
>sp|P87048|RPN1_SCHPO 26S proteasome regulatory subunit rpn1 (Proteasome non-ATPase subunit
            mts4) (19S regulatory cap region of 26S protease subunit
            2)
          Length = 891

 Score =  214 bits (546), Expect = 1e-55
 Identities = 108/193 (55%), Positives = 147/193 (76%)
 Frame = +1

Query: 1    KFSHDSDQELAFTAILSMGLVGAGTNNARLAAMLRQLASFHSKDPHCLFAVRLAQGLLHL 180
            ++SHD+D ++A+ AI +MGLVGAGT+NARLA +LRQLAS++ K+ + LF VR+AQGLL+L
Sbjct: 693  RYSHDNDLDVAYNAIFAMGLVGAGTSNARLAQLLRQLASYYHKESNALFMVRIAQGLLYL 752

Query: 181  GKGTLTISPHHQDRFLMSPVAVGGLLTVLISCLDVKRTFMNRNDYLLFYLTSAFQPRLLM 360
            GKGT+T++P+H +R ++   A  GL+TV+++ LD     ++ + +LL+ +T A +PR+L+
Sbjct: 753  GKGTMTLNPYHTERQILGQTAFAGLMTVVLAMLDANTFVLDTSHWLLYAITLAIRPRMLI 812

Query: 361  TFDEALHPLTVTVRVGQGVDTVGQAGRPKTITGFQTHTTPVLLAAGERAELSTEEYLPVT 540
            T  E    L V+VRVGQ VD VGQAGRPK ITG+ THTTPVLL   ERAEL+TE Y P+T
Sbjct: 813  TLGEDGQYLPVSVRVGQAVDVVGQAGRPKVITGWVTHTTPVLLHHNERAELATEAYTPLT 872

Query: 541  QLPLEGFVILKKN 579
               LEG VILKKN
Sbjct: 873  S--LEGIVILKKN 883
>sp|P38764|RPN1_YEAST 26S proteasome regulatory subunit RPN1 (Proteasome non-ATPase subunit
            1)
          Length = 993

 Score =  191 bits (485), Expect = 2e-48
 Identities = 100/198 (50%), Positives = 138/198 (69%)
 Frame = +1

Query: 1    KFSHDSDQELAFTAILSMGLVGAGTNNARLAAMLRQLASFHSKDPHCLFAVRLAQGLLHL 180
            +FSHD+D E++  +I +MGL GAGTNNARLA +LRQLAS++S++   LF  RLAQGLLHL
Sbjct: 798  RFSHDADLEVSMNSIFAMGLCGAGTNNARLAQLLRQLASYYSREQDALFITRLAQGLLHL 857

Query: 181  GKGTLTISPHHQDRFLMSPVAVGGLLTVLISCLDVKRTFMNRNDYLLFYLTSAFQPRLLM 360
            GKGT+T+   + D  +++ V +  +LT  +    V  +FM ++  L + L +  +P+ ++
Sbjct: 858  GKGTMTMDVFN-DAHVLNKVTLASILTTAVGL--VSPSFMLKHHQLFYMLNAGIRPKFIL 914

Query: 361  TFDEALHPLTVTVRVGQGVDTVGQAGRPKTITGFQTHTTPVLLAAGERAELSTEEYLPVT 540
              ++   P+ V VRVGQ V+TVGQAGRPK ITG+ T +TPVLL  GERAEL T+EY+  T
Sbjct: 915  ALNDEGEPIKVNVRVGQAVETVGQAGRPKKITGWITQSTPVLLNHGERAELETDEYISYT 974

Query: 541  QLPLEGFVILKKNPHYEE 594
               +EG VILKKNP Y E
Sbjct: 975  S-HIEGVVILKKNPDYRE 991
>sp|Q6FPV6|RPN1_CANGA 26S proteasome regulatory subunit RPN1
          Length = 983

 Score =  188 bits (478), Expect = 1e-47
 Identities = 97/198 (48%), Positives = 140/198 (70%)
 Frame = +1

Query: 1    KFSHDSDQELAFTAILSMGLVGAGTNNARLAAMLRQLASFHSKDPHCLFAVRLAQGLLHL 180
            +FSHD D +++  +I +MGL G GTNNARLA +LRQLAS++S++   LF  RLAQGL+HL
Sbjct: 788  RFSHDPDLDVSMNSIFAMGLCGVGTNNARLAQLLRQLASYYSREQDALFITRLAQGLVHL 847

Query: 181  GKGTLTISPHHQDRFLMSPVAVGGLLTVLISCLDVKRTFMNRNDYLLFYLTSAFQPRLLM 360
            GKGT+T+   + D  +++ V +  LLTVL+    +  +F+ ++  L + L S  +P+ ++
Sbjct: 848  GKGTMTMDIFN-DAHVLNKVTLASLLTVLVGL--ISPSFILKHHQLFYMLNSGVRPKFII 904

Query: 361  TFDEALHPLTVTVRVGQGVDTVGQAGRPKTITGFQTHTTPVLLAAGERAELSTEEYLPVT 540
            T +E    + V VR+GQ V+TVGQAG+PKTITG+ T +TPVLL  GERAEL  +EY+  T
Sbjct: 905  TLNEEGEQIKVNVRIGQAVETVGQAGKPKTITGWITQSTPVLLGHGERAELENDEYISYT 964

Query: 541  QLPLEGFVILKKNPHYEE 594
               +EG VILKKNP+++E
Sbjct: 965  N-NIEGVVILKKNPNFQE 981
>sp|O95704|ABB3_HUMAN Amyloid beta A4 precursor protein-binding family B member 3
           (Fe65-like protein 2) (Fe65L2)
          Length = 486

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
 Frame = +1

Query: 370 EALHPLTVTVRVGQGVDTVGQAGRPKTITGFQTHTTPVLLAAGE--------RAELSTEE 525
           EAL+  T+ V    G+D + +A    T  G +    P +L+  +        +AE STEE
Sbjct: 292 EALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTEE 351

Query: 526 YLPVTQLP--LEGFVILKKNPH 585
             P+ Q P  L  F+ + ++PH
Sbjct: 352 E-PLWQCPVRLVTFIGVGRDPH 372
>sp|P55931|ETFD_PIG Electron transfer flavoprotein-ubiquinone oxidoreductase,
           mitochondrial precursor (ETF-QO) (ETF-ubiquinone
           oxidoreductase) (ETF dehydrogenase)
           (Electron-transferring-flavoprotein dehydrogenase)
          Length = 607

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 58  LVGAGTNNARLAAMLRQLASFHSKDPHCLFAVRLAQGLLHLGKGTLT 198
           +VGAG      A  L+QLA+ H KD      V L +   H+G  TL+
Sbjct: 63  IVGAGPAGLSAATRLKQLAAQHEKD----LRVCLVEKAAHIGAHTLS 105
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,751,641
Number of Sequences: 369166
Number of extensions: 1576981
Number of successful extensions: 3641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3633
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)