Planaria EST Database


DrC_01351

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01351
         (570 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JI48|PLAC8_MOUSE  Placenta-specific gene 8 protein (C15...    72   1e-12
sp|Q9NZF1|PLAC8_HUMAN  Placenta-specific gene 8 protein (C15...    69   1e-11
sp|Q9HC84|MUC5B_HUMAN  Mucin-5B precursor (Mucin 5 subtype B...    34   0.29 
sp|P21769|ODFP_RAT  Outer dense fiber protein (RT7 protein) ...    32   1.5  
sp|Q61999|ODFP_MOUSE  Outer dense fiber protein                    32   1.5  
sp|P60331|KR101_HUMAN  Keratin-associated protein 10-1 (Kera...    31   1.9  
sp|P60372|KR104_HUMAN  Keratin-associated protein 10-4 (Kera...    31   2.5  
sp|Q15742|NAB2_HUMAN  NGFI-A binding protein 2 (EGR-1 bindin...    30   3.2  
sp|P60369|KR103_HUMAN  Keratin-associated protein 10-3 (Kera...    30   4.2  
sp|Q9JJV7|KCNE3_RAT  Potassium voltage-gated channel subfami...    30   4.2  
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
          Length = 112

 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
 Frame = +3

Query: 105 TVIIQQPMSQQIGARQ-WSSTLCSCFDDMESCICVFLFEPCYLCHLYSKYDECCCTPWCI 281
           TVI+ QP   +      W ++LC CF D   C+C      C  C + +  +ECC     +
Sbjct: 6   TVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNECC-----L 60

Query: 282 PASSMALRIQHRNRHKIQGTILNDCCMSVFCGPCSTCQVKRDMD 413
             +++A+R  +R R+ I G+I +D  +++FC  CS CQ+KRD++
Sbjct: 61  CGTTVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
          Length = 115

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
 Frame = +3

Query: 90  QGYGQTVIIQQPMSQQIGARQ---WSSTLCSCFDDMESCICVFLFEPCYLCHLYSKYDEC 260
           Q     V++ QP      A Q   W + +C CF D   C+C     PC  C + +  +EC
Sbjct: 2   QAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNEC 61

Query: 261 CCTPWCIPASSMALRIQHRNRHKIQGTILNDCCMSVFCGPCSTCQVKRDMD 413
           C     +  +S+A+R  +R R+ I G+I +D   ++ C  C+ CQ+KRD++
Sbjct: 62  C-----LCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDIN 107
>sp|Q9HC84|MUC5B_HUMAN Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial) (High
            molecular weight salivary mucin MG1) (Sublingual gland
            mucin)
          Length = 5703

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 228  LCHLYSKYDECCCTPWCIPA 287
            + H Y+  DEC CTP+C+PA
Sbjct: 5666 ILHTYTHVDECGCTPFCVPA 5685
>sp|P21769|ODFP_RAT Outer dense fiber protein (RT7 protein) (RTS 5/1)
          Length = 245

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 19/97 (19%)
 Frame = +3

Query: 174 CFDDMES-CICVFLFEPCYLCHL--------YSK----------YDECCCTPWCIPASSM 296
           C D++ S C+C     P   C L        YSK          Y  CC   + +     
Sbjct: 27  CIDEISSRCLCDLYMHPYCCCDLHPYPYCLCYSKRSRSCGLCDLYYPCCLCDYKLYCLRP 86

Query: 297 ALRIQHRNRHKIQGTILNDCCMSVFCGPCSTCQVKRD 407
           +LR   R R      + + CC S   G  + C  + D
Sbjct: 87  SLRSLERLRRTTNRILASSCCSSNILGSVNVCGFEPD 123
>sp|Q61999|ODFP_MOUSE Outer dense fiber protein
          Length = 247

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 19/97 (19%)
 Frame = +3

Query: 174 CFDDMES-CICVFLFEPCYLCHL--------YSK----------YDECCCTPWCIPASSM 296
           C D++ S C+C     P   C L        YSK          Y  CC   + +     
Sbjct: 27  CIDEISSRCLCDLYMHPYCCCDLHPYPYCLCYSKRSRSCGLCDLYYPCCLCDYKLYCLRP 86

Query: 297 ALRIQHRNRHKIQGTILNDCCMSVFCGPCSTCQVKRD 407
           +LR   R R      + + CC S   G  + C  + D
Sbjct: 87  SLRSLERLRRTTNRILASSCCSSNILGSVNVCGFEPD 123
>sp|P60331|KR101_HUMAN Keratin-associated protein 10-1 (Keratin-associated protein 10.1)
           (High sulfur keratin-associated protein 10.1)
           (Keratin-associated protein 18-1) (Keratin-associated
           protein 18.1)
          Length = 282

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +3

Query: 231 CHLYSKYDECCCTPWCIPASSMALRIQHRNRHKIQGTILNDCCMSV--FCGPCSTCQ 395
           C   S    CC T  C P+SS++L  +   R          CCM V   C P S+CQ
Sbjct: 211 CQQSSCQPACCTTSCCRPSSSVSLLCRPVCRPA--------CCMPVSSCCAPASSCQ 259
>sp|P60372|KR104_HUMAN Keratin-associated protein 10-4 (Keratin-associated protein 10.4)
           (High sulfur keratin-associated protein 10.4)
           (Keratin-associated protein 18-4) (Keratin-associated
           protein 18.4)
          Length = 401

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +3

Query: 192 SCICVFLFEPCYLCHLYSKYDECCCTPWCIPASSMALRIQHRNRHKIQGTILNDCCMSV- 368
           SC+ V        C   S    CC T  C P+SS++L  +   R          CC+ V 
Sbjct: 327 SCVPVCSGASSSCCQQSSCQPACCTTSCCRPSSSVSLLCRPVCRPA--------CCVPVP 378

Query: 369 -FCGPCSTCQ 395
             C P S+CQ
Sbjct: 379 SCCAPTSSCQ 388
>sp|Q15742|NAB2_HUMAN NGFI-A binding protein 2 (EGR-1 binding protein 2)
           (Melanoma-associated delayed early response protein)
           (MADER protein)
          Length = 525

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 261 SIHHIWNKDDTNSKVQTEIHRYTIPYHQNKSIM*NSIALHLFAVTLAAVLLQF 103
           S+ HI+  DD +S+ + EI +Y+I Y +  S       L L  +T+     QF
Sbjct: 277 SVGHIFEMDDNDSQKEEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQF 329
>sp|P60369|KR103_HUMAN Keratin-associated protein 10-3 (Keratin-associated protein 10.3)
           (High sulfur keratin-associated protein 10.3)
           (Keratin-associated protein 18-3) (Keratin-associated
           protein 18.3)
          Length = 221

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +3

Query: 231 CHLYSKYDECCCTPWCIPASSMALRIQHRNRHKIQGTILNDCCMSVFCGPCSTC 392
           C   S+   CC T  C P+SS++L             +    C S +C P  +C
Sbjct: 137 CQQSSRQPACCTTSCCRPSSSVSL-------------LCRPVCRSTYCVPIPSC 177
>sp|Q9JJV7|KCNE3_RAT Potassium voltage-gated channel subfamily E member 3 (Minimum
           potassium ion channel-related peptide 2) (Potassium
           channel beta subunit MiRP2) (MinK-related peptide 2)
          Length = 107

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 216 QTEIHRYTIPYHQNKSIM*NSIALHLFAVTLAAVLLQFDHNLVVVDKLD 70
           QTE HR ++P   + S M     + LFAVT+ +++L +  +  V  + D
Sbjct: 46  QTEDHRASLPGRNDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSD 94
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,439,939
Number of Sequences: 369166
Number of extensions: 1360327
Number of successful extensions: 3471
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3449
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)