Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_L07
(570 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 72 1e-12
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 69 1e-11
sp|Q9HC84|MUC5B_HUMAN Mucin-5B precursor (Mucin 5 subtype B... 34 0.29
sp|P21769|ODFP_RAT Outer dense fiber protein (RT7 protein) ... 32 1.5
sp|Q61999|ODFP_MOUSE Outer dense fiber protein 32 1.5
sp|P60331|KR101_HUMAN Keratin-associated protein 10-1 (Kera... 31 1.9
sp|P60372|KR104_HUMAN Keratin-associated protein 10-4 (Kera... 31 2.5
sp|Q15742|NAB2_HUMAN NGFI-A binding protein 2 (EGR-1 bindin... 30 3.2
sp|P60369|KR103_HUMAN Keratin-associated protein 10-3 (Kera... 30 4.2
sp|Q9JJV7|KCNE3_RAT Potassium voltage-gated channel subfami... 30 4.2
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 71.6 bits (174), Expect = 1e-12
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = +3
Query: 105 TVIIQQPMSQQIGARQ-WSSTLCSCFDDMESCICVFLFEPCYLCHLYSKYDECCCTPWCI 281
TVI+ QP + W ++LC CF D C+C C C + + +ECC +
Sbjct: 6 TVIVTQPGFVRAPQNSNWQTSLCDCFSDCGVCLCGTFCFTCLGCQVAADMNECC-----L 60
Query: 282 PASSMALRIQHRNRHKIQGTILNDCCMSVFCGPCSTCQVKRDMD 413
+++A+R +R R+ I G+I +D +++FC CS CQ+KRD++
Sbjct: 61 CGTTVAMRTLYRTRYGIPGSICDDYMVTLFCPVCSVCQLKRDIN 104
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 68.6 bits (166), Expect = 1e-11
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Frame = +3
Query: 90 QGYGQTVIIQQPMSQQIGARQ---WSSTLCSCFDDMESCICVFLFEPCYLCHLYSKYDEC 260
Q V++ QP A Q W + +C CF D C+C PC C + + +EC
Sbjct: 2 QAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNEC 61
Query: 261 CCTPWCIPASSMALRIQHRNRHKIQGTILNDCCMSVFCGPCSTCQVKRDMD 413
C + +S+A+R +R R+ I G+I +D ++ C C+ CQ+KRD++
Sbjct: 62 C-----LCGTSVAMRTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDIN 107
>sp|Q9HC84|MUC5B_HUMAN Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial) (High
molecular weight salivary mucin MG1) (Sublingual gland
mucin)
Length = 5703
Score = 33.9 bits (76), Expect = 0.29
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 228 LCHLYSKYDECCCTPWCIPA 287
+ H Y+ DEC CTP+C+PA
Sbjct: 5666 ILHTYTHVDECGCTPFCVPA 5685
>sp|P21769|ODFP_RAT Outer dense fiber protein (RT7 protein) (RTS 5/1)
Length = 245
Score = 31.6 bits (70), Expect = 1.5
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 19/97 (19%)
Frame = +3
Query: 174 CFDDMES-CICVFLFEPCYLCHL--------YSK----------YDECCCTPWCIPASSM 296
C D++ S C+C P C L YSK Y CC + +
Sbjct: 27 CIDEISSRCLCDLYMHPYCCCDLHPYPYCLCYSKRSRSCGLCDLYYPCCLCDYKLYCLRP 86
Query: 297 ALRIQHRNRHKIQGTILNDCCMSVFCGPCSTCQVKRD 407
+LR R R + + CC S G + C + D
Sbjct: 87 SLRSLERLRRTTNRILASSCCSSNILGSVNVCGFEPD 123
>sp|Q61999|ODFP_MOUSE Outer dense fiber protein
Length = 247
Score = 31.6 bits (70), Expect = 1.5
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 19/97 (19%)
Frame = +3
Query: 174 CFDDMES-CICVFLFEPCYLCHL--------YSK----------YDECCCTPWCIPASSM 296
C D++ S C+C P C L YSK Y CC + +
Sbjct: 27 CIDEISSRCLCDLYMHPYCCCDLHPYPYCLCYSKRSRSCGLCDLYYPCCLCDYKLYCLRP 86
Query: 297 ALRIQHRNRHKIQGTILNDCCMSVFCGPCSTCQVKRD 407
+LR R R + + CC S G + C + D
Sbjct: 87 SLRSLERLRRTTNRILASSCCSSNILGSVNVCGFEPD 123
>sp|P60331|KR101_HUMAN Keratin-associated protein 10-1 (Keratin-associated protein 10.1)
(High sulfur keratin-associated protein 10.1)
(Keratin-associated protein 18-1) (Keratin-associated
protein 18.1)
Length = 282
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 231 CHLYSKYDECCCTPWCIPASSMALRIQHRNRHKIQGTILNDCCMSV--FCGPCSTCQ 395
C S CC T C P+SS++L + R CCM V C P S+CQ
Sbjct: 211 CQQSSCQPACCTTSCCRPSSSVSLLCRPVCRPA--------CCMPVSSCCAPASSCQ 259
>sp|P60372|KR104_HUMAN Keratin-associated protein 10-4 (Keratin-associated protein 10.4)
(High sulfur keratin-associated protein 10.4)
(Keratin-associated protein 18-4) (Keratin-associated
protein 18.4)
Length = 401
Score = 30.8 bits (68), Expect = 2.5
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = +3
Query: 192 SCICVFLFEPCYLCHLYSKYDECCCTPWCIPASSMALRIQHRNRHKIQGTILNDCCMSV- 368
SC+ V C S CC T C P+SS++L + R CC+ V
Sbjct: 327 SCVPVCSGASSSCCQQSSCQPACCTTSCCRPSSSVSLLCRPVCRPA--------CCVPVP 378
Query: 369 -FCGPCSTCQ 395
C P S+CQ
Sbjct: 379 SCCAPTSSCQ 388
>sp|Q15742|NAB2_HUMAN NGFI-A binding protein 2 (EGR-1 binding protein 2)
(Melanoma-associated delayed early response protein)
(MADER protein)
Length = 525
Score = 30.4 bits (67), Expect = 3.2
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 261 SIHHIWNKDDTNSKVQTEIHRYTIPYHQNKSIM*NSIALHLFAVTLAAVLLQF 103
S+ HI+ DD +S+ + EI +Y+I Y + S L L +T+ QF
Sbjct: 277 SVGHIFEMDDNDSQKEEEIRKYSIIYGRFDSKRREGKQLSLHELTINEAAAQF 329
>sp|P60369|KR103_HUMAN Keratin-associated protein 10-3 (Keratin-associated protein 10.3)
(High sulfur keratin-associated protein 10.3)
(Keratin-associated protein 18-3) (Keratin-associated
protein 18.3)
Length = 221
Score = 30.0 bits (66), Expect = 4.2
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +3
Query: 231 CHLYSKYDECCCTPWCIPASSMALRIQHRNRHKIQGTILNDCCMSVFCGPCSTC 392
C S+ CC T C P+SS++L + C S +C P +C
Sbjct: 137 CQQSSRQPACCTTSCCRPSSSVSL-------------LCRPVCRSTYCVPIPSC 177
>sp|Q9JJV7|KCNE3_RAT Potassium voltage-gated channel subfamily E member 3 (Minimum
potassium ion channel-related peptide 2) (Potassium
channel beta subunit MiRP2) (MinK-related peptide 2)
Length = 107
Score = 30.0 bits (66), Expect = 4.2
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 216 QTEIHRYTIPYHQNKSIM*NSIALHLFAVTLAAVLLQFDHNLVVVDKLD 70
QTE HR ++P + S M + LFAVT+ +++L + + V + D
Sbjct: 46 QTEDHRASLPGRNDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSD 94
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,439,939
Number of Sequences: 369166
Number of extensions: 1360327
Number of successful extensions: 3471
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3449
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)