Planaria EST Database


DrC_01348

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01348
         (811 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q97WH0|RAD50_SULSO  DNA double-strand break repair rad50 ...    34   0.54 
sp|Q8K9E4|Y395_BUCAP  Hypothetical UPF0088 protein BUsg395         33   1.2  
sp|Q80ST9|CF152_MOUSE  Protein C6orf152 homolog                    32   2.1  
sp|O67124|RAD50_AQUAE  Probable DNA double-strand break repa...    32   2.7  
sp|Q6CVG9|ATG11_KLULA  Autophagy-related protein 11                31   3.5  
sp|Q9PR38|SYS_UREPA  Seryl-tRNA synthetase (Serine--tRNA lig...    31   3.5  
sp|Q7Z569|BRAP_HUMAN  BRCA1-associated protein (BRAP2) (Impe...    31   4.6  
sp|O13930|SEC2_SCHPO  GTPase-activating protein sec2               31   4.6  
sp|Q58115|Y704_METJA  Hypothetical protein MJ0704                  31   4.6  
sp|Q03410|SYCP1_RAT  Synaptonemal complex protein 1 (SCP-1 p...    31   4.6  
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
          Length = 864

 Score = 33.9 bits (76), Expect = 0.54
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
 Frame = +2

Query: 497 NESISNKIFEEFHSLYN---SITKYFINEYHENMKVEISKSIELFISDQKELYKLYCNFQ 667
           NE I N +  E  SL N    I K  INE  + +K+   + + L    ++EL K      
Sbjct: 498 NEEIEN-LHSEIESLKNIDEEIKK--INEEVKELKLYYEEFMRLSKYTKEELDKKRVKLD 554

Query: 668 NVKKKCQRLETKMKNKKDELEKLSSRLIT*K*VILDLK 781
            +KKK + +E +M+  + EL+ L  + +  K  ILDL+
Sbjct: 555 EMKKKKEEIEKEMRGLESELKGLDRKALESK--ILDLE 590
>sp|Q8K9E4|Y395_BUCAP Hypothetical UPF0088 protein BUsg395
          Length = 246

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 578 HENMKVEISKSIELFISDQKELYKLYCNFQN 670
           +E M   I KS+EL ++    L+  YCNFQN
Sbjct: 91  NEKMNFSIQKSVELGVNTITPLFSEYCNFQN 121
>sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog
          Length = 704

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 15/59 (25%), Positives = 34/59 (57%)
 Frame = +2

Query: 554 TKYFINEYHENMKVEISKSIELFISDQKELYKLYCNFQNVKKKCQRLETKMKNKKDELE 730
           T+  I E  +N+++  +      ++++K  ++ Y   + ++K+ QRL  K+K K+ EL+
Sbjct: 238 TERKIKELSKNLELSTNSFQRQLLAERKRAFEAYDENKVLQKELQRLHHKLKEKEKELD 296
>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase
          Length = 978

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 23/94 (24%), Positives = 46/94 (48%)
 Frame = +2

Query: 5   DFQKLVEENSDIQESTVELLEVEFPKCVSRYFRESVLNLENLLKPIFKQESIYKNYTDAE 184
           +F + ++E+S+ ++  + LL +E  + V +   E+  NLE   + + K+  + K+YT  +
Sbjct: 142 EFDRFLKESSERKKILINLLGLEELEKVRQLASETFKNLEGKREALKKEYELLKDYTPTK 201

Query: 185 TETYLFHGEYFKDISKKYEESISKNINETSCDIR 286
            E         +   K  EE + K + ET   +R
Sbjct: 202 KEV-------LEKTLKNLEEEL-KELKETEEKLR 227
>sp|Q6CVG9|ATG11_KLULA Autophagy-related protein 11
          Length = 1046

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +2

Query: 485 PVISNESISNKIFEEFHSLYNSITKYFINEYHENMKVEIS--KSIELFISDQKELYKLYC 658
           P    +  SNK FEEF +L   I+KY  +E  + ++ E+S  KS    +  +K  Y+   
Sbjct: 569 PSSKQQHESNKTFEEFQNLQKDISKY--SELTKTLETELSTLKSQLSHMEVEKNAYRE-- 624

Query: 659 NFQNVKKKCQRLETKMKNKKDELEKLS 739
           +  N+ K+   L  + +N   E+   S
Sbjct: 625 SMTNLNKELSTLLIERENFYSEMNSRS 651
>sp|Q9PR38|SYS_UREPA Seryl-tRNA synthetase (Serine--tRNA ligase) (SerRS)
          Length = 418

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +2

Query: 497 NESISNKIFEEFHSLYNSITKYFINEYHENMKV-EISKSIELFISDQK-ELYKLYCNFQN 670
           N+ + + +F++   L   +      E + N K  ++SK I +   ++  +L +      N
Sbjct: 20  NKKVPSNLFDQIFDLDVLVRSLMQQEQNLNAKKNQLSKEIGILAKNKDPKLQQTLDLVNN 79

Query: 671 VKKKCQRLETKMKNKKDELEKL 736
           +K + Q +   + NK+DEL KL
Sbjct: 80  IKNELQDISLTLSNKQDELNKL 101
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein (BRAP2) (Impedes mitogenic signal
           propagation) (IMP) (RING finger protein 52)
          Length = 592

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +2

Query: 584 NMKVEISKSIELFISDQKELYKLYCNFQNVKKKCQRLETKMKNKKDELEK 733
           NMK +  ++IE   + + +L  L    Q+V++KC +L TK+    +EL++
Sbjct: 440 NMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKE 489
>sp|O13930|SEC2_SCHPO GTPase-activating protein sec2
          Length = 527

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 563 FINEYHENMKV-EISKSIELFISDQKELYKLYCNFQNVKKKCQRLETKMKNKKDELEKLS 739
           +  E H N  + E  + +E  +S +K   +    F N+++K Q  ETK +N + E  ++ 
Sbjct: 49  YATEVHRNEALSERIRELEAKLSAKKSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVE 108

Query: 740 SRL 748
           + L
Sbjct: 109 NEL 111
>sp|Q58115|Y704_METJA Hypothetical protein MJ0704
          Length = 377

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +2

Query: 545 NSITKYFINEYHENMKVEISKS---IELFISDQKELYKLYCNFQNVKKKCQRLETKMKNK 715
           NSI K+    Y+     E+      +E+F+   KEL + Y   +N  K  + +  ++   
Sbjct: 297 NSINKFLSETYNNISNYEMFNDKTYLEIFVHHLKELLEKYEKEKNENKLDEEIFNEL--- 353

Query: 716 KDELEKLSSR 745
           KDELEKL ++
Sbjct: 354 KDELEKLINK 363
>sp|Q03410|SYCP1_RAT Synaptonemal complex protein 1 (SCP-1 protein)
          Length = 997

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 19/63 (30%), Positives = 35/63 (55%)
 Frame = +2

Query: 548 SITKYFINEYHENMKVEISKSIELFISDQKELYKLYCNFQNVKKKCQRLETKMKNKKDEL 727
           S+ K FI +  E +K ++ KS E   S + E+ K     + ++ KC  L+ +++NK   +
Sbjct: 579 SVRKEFIQQGDE-VKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKSKNI 637

Query: 728 EKL 736
           E+L
Sbjct: 638 EEL 640
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,885,539
Number of Sequences: 369166
Number of extensions: 1237036
Number of successful extensions: 4501
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4493
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)