Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_K15
(811 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 34 0.54
sp|Q8K9E4|Y395_BUCAP Hypothetical UPF0088 protein BUsg395 33 1.2
sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog 32 2.1
sp|O67124|RAD50_AQUAE Probable DNA double-strand break repa... 32 2.7
sp|Q6CVG9|ATG11_KLULA Autophagy-related protein 11 31 3.5
sp|Q9PR38|SYS_UREPA Seryl-tRNA synthetase (Serine--tRNA lig... 31 3.5
sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein (BRAP2) (Impe... 31 4.6
sp|O13930|SEC2_SCHPO GTPase-activating protein sec2 31 4.6
sp|Q58115|Y704_METJA Hypothetical protein MJ0704 31 4.6
sp|Q03410|SYCP1_RAT Synaptonemal complex protein 1 (SCP-1 p... 31 4.6
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 33.9 bits (76), Expect = 0.54
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Frame = +2
Query: 497 NESISNKIFEEFHSLYN---SITKYFINEYHENMKVEISKSIELFISDQKELYKLYCNFQ 667
NE I N + E SL N I K INE + +K+ + + L ++EL K
Sbjct: 498 NEEIEN-LHSEIESLKNIDEEIKK--INEEVKELKLYYEEFMRLSKYTKEELDKKRVKLD 554
Query: 668 NVKKKCQRLETKMKNKKDELEKLSSRLIT*K*VILDLK 781
+KKK + +E +M+ + EL+ L + + K ILDL+
Sbjct: 555 EMKKKKEEIEKEMRGLESELKGLDRKALESK--ILDLE 590
>sp|Q8K9E4|Y395_BUCAP Hypothetical UPF0088 protein BUsg395
Length = 246
Score = 32.7 bits (73), Expect = 1.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 578 HENMKVEISKSIELFISDQKELYKLYCNFQN 670
+E M I KS+EL ++ L+ YCNFQN
Sbjct: 91 NEKMNFSIQKSVELGVNTITPLFSEYCNFQN 121
>sp|Q80ST9|CF152_MOUSE Protein C6orf152 homolog
Length = 704
Score = 32.0 bits (71), Expect = 2.1
Identities = 15/59 (25%), Positives = 34/59 (57%)
Frame = +2
Query: 554 TKYFINEYHENMKVEISKSIELFISDQKELYKLYCNFQNVKKKCQRLETKMKNKKDELE 730
T+ I E +N+++ + ++++K ++ Y + ++K+ QRL K+K K+ EL+
Sbjct: 238 TERKIKELSKNLELSTNSFQRQLLAERKRAFEAYDENKVLQKELQRLHHKLKEKEKELD 296
>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase
Length = 978
Score = 31.6 bits (70), Expect = 2.7
Identities = 23/94 (24%), Positives = 46/94 (48%)
Frame = +2
Query: 5 DFQKLVEENSDIQESTVELLEVEFPKCVSRYFRESVLNLENLLKPIFKQESIYKNYTDAE 184
+F + ++E+S+ ++ + LL +E + V + E+ NLE + + K+ + K+YT +
Sbjct: 142 EFDRFLKESSERKKILINLLGLEELEKVRQLASETFKNLEGKREALKKEYELLKDYTPTK 201
Query: 185 TETYLFHGEYFKDISKKYEESISKNINETSCDIR 286
E + K EE + K + ET +R
Sbjct: 202 KEV-------LEKTLKNLEEEL-KELKETEEKLR 227
>sp|Q6CVG9|ATG11_KLULA Autophagy-related protein 11
Length = 1046
Score = 31.2 bits (69), Expect = 3.5
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +2
Query: 485 PVISNESISNKIFEEFHSLYNSITKYFINEYHENMKVEIS--KSIELFISDQKELYKLYC 658
P + SNK FEEF +L I+KY +E + ++ E+S KS + +K Y+
Sbjct: 569 PSSKQQHESNKTFEEFQNLQKDISKY--SELTKTLETELSTLKSQLSHMEVEKNAYRE-- 624
Query: 659 NFQNVKKKCQRLETKMKNKKDELEKLS 739
+ N+ K+ L + +N E+ S
Sbjct: 625 SMTNLNKELSTLLIERENFYSEMNSRS 651
>sp|Q9PR38|SYS_UREPA Seryl-tRNA synthetase (Serine--tRNA ligase) (SerRS)
Length = 418
Score = 31.2 bits (69), Expect = 3.5
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2
Query: 497 NESISNKIFEEFHSLYNSITKYFINEYHENMKV-EISKSIELFISDQK-ELYKLYCNFQN 670
N+ + + +F++ L + E + N K ++SK I + ++ +L + N
Sbjct: 20 NKKVPSNLFDQIFDLDVLVRSLMQQEQNLNAKKNQLSKEIGILAKNKDPKLQQTLDLVNN 79
Query: 671 VKKKCQRLETKMKNKKDELEKL 736
+K + Q + + NK+DEL KL
Sbjct: 80 IKNELQDISLTLSNKQDELNKL 101
>sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein (BRAP2) (Impedes mitogenic signal
propagation) (IMP) (RING finger protein 52)
Length = 592
Score = 30.8 bits (68), Expect = 4.6
Identities = 16/50 (32%), Positives = 30/50 (60%)
Frame = +2
Query: 584 NMKVEISKSIELFISDQKELYKLYCNFQNVKKKCQRLETKMKNKKDELEK 733
NMK + ++IE + + +L L Q+V++KC +L TK+ +EL++
Sbjct: 440 NMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKE 489
>sp|O13930|SEC2_SCHPO GTPase-activating protein sec2
Length = 527
Score = 30.8 bits (68), Expect = 4.6
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 563 FINEYHENMKV-EISKSIELFISDQKELYKLYCNFQNVKKKCQRLETKMKNKKDELEKLS 739
+ E H N + E + +E +S +K + F N+++K Q ETK +N + E ++
Sbjct: 49 YATEVHRNEALSERIRELEAKLSAKKSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVE 108
Query: 740 SRL 748
+ L
Sbjct: 109 NEL 111
>sp|Q58115|Y704_METJA Hypothetical protein MJ0704
Length = 377
Score = 30.8 bits (68), Expect = 4.6
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 545 NSITKYFINEYHENMKVEISKS---IELFISDQKELYKLYCNFQNVKKKCQRLETKMKNK 715
NSI K+ Y+ E+ +E+F+ KEL + Y +N K + + ++
Sbjct: 297 NSINKFLSETYNNISNYEMFNDKTYLEIFVHHLKELLEKYEKEKNENKLDEEIFNEL--- 353
Query: 716 KDELEKLSSR 745
KDELEKL ++
Sbjct: 354 KDELEKLINK 363
>sp|Q03410|SYCP1_RAT Synaptonemal complex protein 1 (SCP-1 protein)
Length = 997
Score = 30.8 bits (68), Expect = 4.6
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +2
Query: 548 SITKYFINEYHENMKVEISKSIELFISDQKELYKLYCNFQNVKKKCQRLETKMKNKKDEL 727
S+ K FI + E +K ++ KS E S + E+ K + ++ KC L+ +++NK +
Sbjct: 579 SVRKEFIQQGDE-VKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKSKNI 637
Query: 728 EKL 736
E+L
Sbjct: 638 EEL 640
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,885,539
Number of Sequences: 369166
Number of extensions: 1237036
Number of successful extensions: 4501
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4493
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)