Planaria EST Database


DrC_01343

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01343
         (393 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7NB47|SYL_MYCGA  Leucyl-tRNA synthetase (Leucine--tRNA l...    32   0.35 
sp|P52160|MYC_BRARE  Myc protein (c-myc) (zc-Myc)                  32   0.46 
sp|P22763|ARCB_ECOLI  Aerobic respiration control sensor pro...    32   0.60 
sp|Q8RHI7|RPOC_FUSNN  DNA-directed RNA polymerase beta' chai...    32   0.60 
sp|P58363|ARCB_ECO57  Aerobic respiration control sensor pro...    32   0.60 
sp|P38326|SWC5_YEAST  SWR1-complex protein 5                       32   0.60 
sp|Q8E9R9|RRA2_SHEON  Regulator of ribonuclease activity A p...    31   1.0  
sp|P70582|NUP54_RAT  Nucleoporin p54 (54 kDa nucleoporin)          31   1.0  
sp|P49587|PCY1_PLAFK  Choline-phosphate cytidylyltransferase...    30   1.3  
sp|Q7Z460|CLAP1_HUMAN  CLIP-associating protein 1 (Cytoplasm...    30   1.7  
>sp|Q7NB47|SYL_MYCGA Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
          Length = 805

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = +3

Query: 132 DQSEMVDSSGNIVNPEEEILYQDNDTHQTRPISAPAIKRNRNEVWSNDKLNSSNSSVKSE 311
           D ++M  S GNI+NP++ +L    DT +T  +    +  N +  W+++ LN +   ++  
Sbjct: 580 DNTKMSKSKGNIINPDDLVLSHGADTIRTYVMFMGPL--NASLAWNSNALNGTRKFLERV 637

Query: 312 RNYGSR 329
            N   R
Sbjct: 638 YNLFDR 643
>sp|P52160|MYC_BRARE Myc protein (c-myc) (zc-Myc)
          Length = 408

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
 Frame = +3

Query: 27  ESESDVLPHQEKYIDGNSKNDVDIV-VSRGGKIHLLDQSEMVDSSGNIVNPEEEILYQDN 203
           E + +    +E+  +   + ++D+V V +  K H  D SE    S  ++       +Q N
Sbjct: 212 EEDEEEEEEEEEEEEEEEEEEIDVVTVEKRQKRHETDASESRYPSPLVLKRCHVSTHQHN 271

Query: 204 -DTHQTRPISAPAIKRNRNEVWSNDKLNSSNSS 299
              H +     PA+KR R E  +N  +NSS+S+
Sbjct: 272 YAAHPSTRHDQPAVKRLRLEASNNHSINSSSSN 304
>sp|P22763|ARCB_ECOLI Aerobic respiration control sensor protein arcB
          Length = 778

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 20/84 (23%), Positives = 41/84 (48%)
 Frame = +3

Query: 132 DQSEMVDSSGNIVNPEEEILYQDNDTHQTRPISAPAIKRNRNEVWSNDKLNSSNSSVKSE 311
           D   +V  + N++  ++E L    D   ++P+S PA+     + W  D  +   S+V +E
Sbjct: 599 DLPPLVALTANVLKDKQEYLNAGMDDVLSKPLSVPALTAMIKKFW--DTQDDEESTVTTE 656

Query: 312 RNYGSRQSSRTGSKYDVPKVDREL 383
            N      S++ +  D+P +++ L
Sbjct: 657 EN------SKSEALLDIPMLEQYL 674
>sp|Q8RHI7|RPOC_FUSNN DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
            (Transcriptase beta' chain) (RNA polymerase beta'
            subunit)
          Length = 1319

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +3

Query: 24   SESESDVLPHQEKYIDGNSKNDVDIVVSRGGKIHLLDQSEMVDSSGNIVNPEEEILYQDN 203
            +E++ +V     K I+ N +   D+VVS+GGKI + D    VD SG+++   E    ++ 
Sbjct: 910  AENDGEVSFRDIKTIEINGE---DVVVSQGGKIIIADNEHEVD-SGSVIRVTEGQKVKEG 965

Query: 204  DTHQT-RPISAPAIKRNRNEV 263
            D   T  P   P I  +  +V
Sbjct: 966  DVLVTFDPYHIPIISSHDGKV 986
>sp|P58363|ARCB_ECO57 Aerobic respiration control sensor protein arcB
          Length = 778

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 20/84 (23%), Positives = 41/84 (48%)
 Frame = +3

Query: 132 DQSEMVDSSGNIVNPEEEILYQDNDTHQTRPISAPAIKRNRNEVWSNDKLNSSNSSVKSE 311
           D   +V  + N++  ++E L    D   ++P+S PA+     + W  D  +   S+V +E
Sbjct: 599 DLPPLVALTANVLKDKQEYLNAGMDDVLSKPLSVPALTAMIKKFW--DTQDDEESTVTTE 656

Query: 312 RNYGSRQSSRTGSKYDVPKVDREL 383
            N      S++ +  D+P +++ L
Sbjct: 657 EN------SKSEALLDIPMLEQYL 674
>sp|P38326|SWC5_YEAST SWR1-complex protein 5
          Length = 303

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
 Frame = +3

Query: 9   EANSISESESDVLPHQEKYIDGNSKNDV-------DIVVSRGGKIHLLDQSEMVDSSGNI 167
           E   I E + D  P ++K   G+  +D        D  V+R    + +D S +   SG +
Sbjct: 18  EDGYIEEEDEDFQPEKDKLGGGSDDSDASDGGDDYDDGVNRDKGRNKVDYSRIESESGGL 77

Query: 168 VNPEEEILYQDN--DTHQTRPISAPAIKRNRNEVW------SNDKLNSSNSSVKSERNYG 323
           +        ++    TH+   ++  +I    N +W      S ++L SS+  V S  +  
Sbjct: 78  IKTRRARQAEEEYAKTHKYESLTVESIPAKVNSIWEELQEASKNRLLSSSGKVGSVLDGS 137

Query: 324 SRQSSRTGSKYDVPKVDRELLQR 392
               S T ++ +    D+ L++R
Sbjct: 138 KEARSTTAAQQE----DKILIER 156
>sp|Q8E9R9|RRA2_SHEON Regulator of ribonuclease activity A protein 2
          Length = 161

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 69  DGNSKNDVDIVVSRGGKIHLLDQSEMVDSSGNIVNPE 179
           DGNS  +VDI V+ GG   L       D++G I++PE
Sbjct: 120 DGNSVGEVDIPVNFGGVTFLPGDHIYADNTGIILSPE 156
>sp|P70582|NUP54_RAT Nucleoporin p54 (54 kDa nucleoporin)
          Length = 510

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +3

Query: 120 IHLLDQSEMVDSSGNIVNPEEEILYQDNDTHQTRPISAPAIKRNRNEVWSNDKLNSSNSS 299
           + +L + E+   SG  +  EEE L    DT Q    +    K   NE+ S  ++ +   +
Sbjct: 390 LQVLIKQEIQRKSGYAIQAEEEQLRVQLDTIQGELNAPTQFKGRLNELMSQIRMQNHFGA 449

Query: 300 VKSERNY 320
           VKSE  Y
Sbjct: 450 VKSEEKY 456
>sp|P49587|PCY1_PLAFK Choline-phosphate cytidylyltransferase (Phosphorylcholine
           transferase) (CTP:phosphocholine cytidylyltransferase)
           (CT) (CCT)
          Length = 370

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
 Frame = +3

Query: 117 KIHLLDQSEMVDSSGNIVN-PEEEILYQDNDTHQ-----TRPISAPAIKRNRNEVWSNDK 278
           K  L + +E ++SS N +N  ++E + + N  +Q     T P + P    + ++  SND+
Sbjct: 11  KTMLSEHNESIESSNNDINGKQKEHIKKGNSENQDVDPDTNPDAVPDDDDDDDDN-SNDE 69

Query: 279 LNSSNSSVKSERNYGSRQSSR 341
               +S + SE+N GS ++S+
Sbjct: 70  SEYESSQMDSEKNKGSIKNSK 90
>sp|Q7Z460|CLAP1_HUMAN CLIP-associating protein 1 (Cytoplasmic linker-associated protein
           1) (Multiple asters homolog 1)
          Length = 1538

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 261 VWSNDKLNSSNSSVKSERNYGSR 329
           ++S+D  NS  SSV SER+YGSR
Sbjct: 821 MYSDDDANSDASSVCSERSYGSR 843
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,765,261
Number of Sequences: 369166
Number of extensions: 681982
Number of successful extensions: 2459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2455
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)