Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_J07
(393 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7NB47|SYL_MYCGA Leucyl-tRNA synthetase (Leucine--tRNA l... 32 0.35
sp|P52160|MYC_BRARE Myc protein (c-myc) (zc-Myc) 32 0.46
sp|P22763|ARCB_ECOLI Aerobic respiration control sensor pro... 32 0.60
sp|Q8RHI7|RPOC_FUSNN DNA-directed RNA polymerase beta' chai... 32 0.60
sp|P58363|ARCB_ECO57 Aerobic respiration control sensor pro... 32 0.60
sp|P38326|SWC5_YEAST SWR1-complex protein 5 32 0.60
sp|Q8E9R9|RRA2_SHEON Regulator of ribonuclease activity A p... 31 1.0
sp|P70582|NUP54_RAT Nucleoporin p54 (54 kDa nucleoporin) 31 1.0
sp|P49587|PCY1_PLAFK Choline-phosphate cytidylyltransferase... 30 1.3
sp|Q7Z460|CLAP1_HUMAN CLIP-associating protein 1 (Cytoplasm... 30 1.7
>sp|Q7NB47|SYL_MYCGA Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 805
Score = 32.3 bits (72), Expect = 0.35
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +3
Query: 132 DQSEMVDSSGNIVNPEEEILYQDNDTHQTRPISAPAIKRNRNEVWSNDKLNSSNSSVKSE 311
D ++M S GNI+NP++ +L DT +T + + N + W+++ LN + ++
Sbjct: 580 DNTKMSKSKGNIINPDDLVLSHGADTIRTYVMFMGPL--NASLAWNSNALNGTRKFLERV 637
Query: 312 RNYGSR 329
N R
Sbjct: 638 YNLFDR 643
>sp|P52160|MYC_BRARE Myc protein (c-myc) (zc-Myc)
Length = 408
Score = 32.0 bits (71), Expect = 0.46
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +3
Query: 27 ESESDVLPHQEKYIDGNSKNDVDIV-VSRGGKIHLLDQSEMVDSSGNIVNPEEEILYQDN 203
E + + +E+ + + ++D+V V + K H D SE S ++ +Q N
Sbjct: 212 EEDEEEEEEEEEEEEEEEEEEIDVVTVEKRQKRHETDASESRYPSPLVLKRCHVSTHQHN 271
Query: 204 -DTHQTRPISAPAIKRNRNEVWSNDKLNSSNSS 299
H + PA+KR R E +N +NSS+S+
Sbjct: 272 YAAHPSTRHDQPAVKRLRLEASNNHSINSSSSN 304
>sp|P22763|ARCB_ECOLI Aerobic respiration control sensor protein arcB
Length = 778
Score = 31.6 bits (70), Expect = 0.60
Identities = 20/84 (23%), Positives = 41/84 (48%)
Frame = +3
Query: 132 DQSEMVDSSGNIVNPEEEILYQDNDTHQTRPISAPAIKRNRNEVWSNDKLNSSNSSVKSE 311
D +V + N++ ++E L D ++P+S PA+ + W D + S+V +E
Sbjct: 599 DLPPLVALTANVLKDKQEYLNAGMDDVLSKPLSVPALTAMIKKFW--DTQDDEESTVTTE 656
Query: 312 RNYGSRQSSRTGSKYDVPKVDREL 383
N S++ + D+P +++ L
Sbjct: 657 EN------SKSEALLDIPMLEQYL 674
>sp|Q8RHI7|RPOC_FUSNN DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
(Transcriptase beta' chain) (RNA polymerase beta'
subunit)
Length = 1319
Score = 31.6 bits (70), Expect = 0.60
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +3
Query: 24 SESESDVLPHQEKYIDGNSKNDVDIVVSRGGKIHLLDQSEMVDSSGNIVNPEEEILYQDN 203
+E++ +V K I+ N + D+VVS+GGKI + D VD SG+++ E ++
Sbjct: 910 AENDGEVSFRDIKTIEINGE---DVVVSQGGKIIIADNEHEVD-SGSVIRVTEGQKVKEG 965
Query: 204 DTHQT-RPISAPAIKRNRNEV 263
D T P P I + +V
Sbjct: 966 DVLVTFDPYHIPIISSHDGKV 986
>sp|P58363|ARCB_ECO57 Aerobic respiration control sensor protein arcB
Length = 778
Score = 31.6 bits (70), Expect = 0.60
Identities = 20/84 (23%), Positives = 41/84 (48%)
Frame = +3
Query: 132 DQSEMVDSSGNIVNPEEEILYQDNDTHQTRPISAPAIKRNRNEVWSNDKLNSSNSSVKSE 311
D +V + N++ ++E L D ++P+S PA+ + W D + S+V +E
Sbjct: 599 DLPPLVALTANVLKDKQEYLNAGMDDVLSKPLSVPALTAMIKKFW--DTQDDEESTVTTE 656
Query: 312 RNYGSRQSSRTGSKYDVPKVDREL 383
N S++ + D+P +++ L
Sbjct: 657 EN------SKSEALLDIPMLEQYL 674
>sp|P38326|SWC5_YEAST SWR1-complex protein 5
Length = 303
Score = 31.6 bits (70), Expect = 0.60
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Frame = +3
Query: 9 EANSISESESDVLPHQEKYIDGNSKNDV-------DIVVSRGGKIHLLDQSEMVDSSGNI 167
E I E + D P ++K G+ +D D V+R + +D S + SG +
Sbjct: 18 EDGYIEEEDEDFQPEKDKLGGGSDDSDASDGGDDYDDGVNRDKGRNKVDYSRIESESGGL 77
Query: 168 VNPEEEILYQDN--DTHQTRPISAPAIKRNRNEVW------SNDKLNSSNSSVKSERNYG 323
+ ++ TH+ ++ +I N +W S ++L SS+ V S +
Sbjct: 78 IKTRRARQAEEEYAKTHKYESLTVESIPAKVNSIWEELQEASKNRLLSSSGKVGSVLDGS 137
Query: 324 SRQSSRTGSKYDVPKVDRELLQR 392
S T ++ + D+ L++R
Sbjct: 138 KEARSTTAAQQE----DKILIER 156
>sp|Q8E9R9|RRA2_SHEON Regulator of ribonuclease activity A protein 2
Length = 161
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 69 DGNSKNDVDIVVSRGGKIHLLDQSEMVDSSGNIVNPE 179
DGNS +VDI V+ GG L D++G I++PE
Sbjct: 120 DGNSVGEVDIPVNFGGVTFLPGDHIYADNTGIILSPE 156
>sp|P70582|NUP54_RAT Nucleoporin p54 (54 kDa nucleoporin)
Length = 510
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +3
Query: 120 IHLLDQSEMVDSSGNIVNPEEEILYQDNDTHQTRPISAPAIKRNRNEVWSNDKLNSSNSS 299
+ +L + E+ SG + EEE L DT Q + K NE+ S ++ + +
Sbjct: 390 LQVLIKQEIQRKSGYAIQAEEEQLRVQLDTIQGELNAPTQFKGRLNELMSQIRMQNHFGA 449
Query: 300 VKSERNY 320
VKSE Y
Sbjct: 450 VKSEEKY 456
>sp|P49587|PCY1_PLAFK Choline-phosphate cytidylyltransferase (Phosphorylcholine
transferase) (CTP:phosphocholine cytidylyltransferase)
(CT) (CCT)
Length = 370
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Frame = +3
Query: 117 KIHLLDQSEMVDSSGNIVN-PEEEILYQDNDTHQ-----TRPISAPAIKRNRNEVWSNDK 278
K L + +E ++SS N +N ++E + + N +Q T P + P + ++ SND+
Sbjct: 11 KTMLSEHNESIESSNNDINGKQKEHIKKGNSENQDVDPDTNPDAVPDDDDDDDDN-SNDE 69
Query: 279 LNSSNSSVKSERNYGSRQSSR 341
+S + SE+N GS ++S+
Sbjct: 70 SEYESSQMDSEKNKGSIKNSK 90
>sp|Q7Z460|CLAP1_HUMAN CLIP-associating protein 1 (Cytoplasmic linker-associated protein
1) (Multiple asters homolog 1)
Length = 1538
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +3
Query: 261 VWSNDKLNSSNSSVKSERNYGSR 329
++S+D NS SSV SER+YGSR
Sbjct: 821 MYSDDDANSDASSVCSERSYGSR 843
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,765,261
Number of Sequences: 369166
Number of extensions: 681982
Number of successful extensions: 2459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2455
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)