Planaria EST Database


DrC_01341

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01341
         (422 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55809|SCOT_HUMAN  Succinyl-CoA:3-ketoacid-coenzyme A tra...   182   3e-46
sp|Q9BYC2|SCOT2_HUMAN  Succinyl-CoA:3-ketoacid-coenzyme A tr...   178   4e-45
sp|Q29551|SCOT_PIG  Succinyl-CoA:3-ketoacid-coenzyme A trans...   178   4e-45
sp|Q9D0K2|SCOT_MOUSE  Succinyl-CoA:3-ketoacid-coenzyme A tra...   178   5e-45
sp|Q09450|SCOT_CAEEL  Probable succinyl-CoA:3-ketoacid-coenz...   156   2e-38
sp|O34264|SCOA_XANCP  Succinyl-CoA:3-ketoacid-coenzyme A tra...   132   4e-31
sp|P42315|SCOA_BACSU  Probable succinyl-CoA:3-ketoacid-coenz...   130   1e-30
sp|Q9ZLE3|SCOA_HELPJ  Succinyl-CoA:3-ketoacid-coenzyme A tra...   128   4e-30
sp|P63649|SCOA_MYCBO  Probable succinyl-CoA:3-ketoacid-coenz...   126   2e-29
sp|P56006|SCOA_HELPY  Succinyl-CoA:3-ketoacid-coenzyme A tra...   126   2e-29
>sp|P55809|SCOT_HUMAN Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
           precursor (Somatic-type succinyl CoA:3-oxoacid
           CoA-transferase) (Scot-S)
          Length = 520

 Score =  182 bits (462), Expect = 3e-46
 Identities = 85/139 (61%), Positives = 107/139 (76%)
 Frame = +2

Query: 5   PQGTLAERIRAGGAGIPAFYTPTAYGTLIQLGGTPIKYDSKGQVLLTSEPKEDRLINGRN 184
           PQGTLAERIRAGGAG+PAFYTPT YGTL+Q GG+PIKY+  G V + S+P+E R  NG++
Sbjct: 137 PQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGSPIKYNKDGSVAIASKpreVREFNGQH 196

Query: 185 YVMETAIRGNFALIKAWKADKAGNVIFRKTARNFNETMCRAADTTXXXXXXXXXXXXXDP 364
           +++E AI G+FAL+KAWKAD+AGNVIFRK+ARNFN  MC+AA+TT              P
Sbjct: 197 FILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAETTVVEVEEIVDIGAFAP 256

Query: 365 DHIHVPGIYVDRVLLGEKY 421
           + IH+P IYV R++ GEKY
Sbjct: 257 EDIHIPQIYVHRLIKGEKY 275
>sp|Q9BYC2|SCOT2_HUMAN Succinyl-CoA:3-ketoacid-coenzyme A transferase 2, mitochondrial
           precursor (Testis-specific succinyl CoA:3-oxoacid
           CoA-transferase) (SCOT-t)
          Length = 517

 Score =  178 bits (452), Expect = 4e-45
 Identities = 83/139 (59%), Positives = 103/139 (74%)
 Frame = +2

Query: 5   PQGTLAERIRAGGAGIPAFYTPTAYGTLIQLGGTPIKYDSKGQVLLTSEPKEDRLINGRN 184
           PQGTLAERIRAGGAG+PAFYTPT YGTL+Q GG PI+Y   G + L S+P+E R  NG +
Sbjct: 137 PQGTLAERIRAGGAGVPAFYTPTGYGTLVQEGGAPIRYTPDGHLALMSQpreVREFNGDH 196

Query: 185 YVMETAIRGNFALIKAWKADKAGNVIFRKTARNFNETMCRAADTTXXXXXXXXXXXXXDP 364
           +++E AIR +FAL+K WKAD+AGNV+FR++ARNFN  MC+AAD T              P
Sbjct: 197 FLLERAIRADFALVKGWKADRAGNVVFRRSARNFNVPMCKAADVTAVEVEEIVEVGAFPP 256

Query: 365 DHIHVPGIYVDRVLLGEKY 421
           + IHVP IYVDRV+ G+KY
Sbjct: 257 EDIHVPNIYVDRVIKGQKY 275
>sp|Q29551|SCOT_PIG Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
           precursor (Somatic-type succinyl CoA:3-oxoacid
           CoA-transferase) (Scot-S)
          Length = 520

 Score =  178 bits (452), Expect = 4e-45
 Identities = 83/139 (59%), Positives = 106/139 (76%)
 Frame = +2

Query: 5   PQGTLAERIRAGGAGIPAFYTPTAYGTLIQLGGTPIKYDSKGQVLLTSEPKEDRLINGRN 184
           PQGTLAERIRAGGAG+PAFYT T YGTL+Q GG+PIKY+  G + + S+P+E R  NG++
Sbjct: 137 PQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSIAIASKpreVREFNGQH 196

Query: 185 YVMETAIRGNFALIKAWKADKAGNVIFRKTARNFNETMCRAADTTXXXXXXXXXXXXXDP 364
           +++E AIRG+FAL+KAWKAD+AGNV FRK+ARNFN  MC+AA+TT              P
Sbjct: 197 FILEEAIRGDFALVKAWKADQAGNVTFRKSARNFNLPMCKAAETTVVEVEEIVDIGSFAP 256

Query: 365 DHIHVPGIYVDRVLLGEKY 421
           + IH+P IYV R++ GEKY
Sbjct: 257 EDIHIPKIYVHRLVKGEKY 275
>sp|Q9D0K2|SCOT_MOUSE Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
           precursor (Somatic-type succinyl CoA:3-oxoacid
           CoA-transferase) (Scot-S)
          Length = 520

 Score =  178 bits (451), Expect = 5e-45
 Identities = 84/139 (60%), Positives = 105/139 (75%)
 Frame = +2

Query: 5   PQGTLAERIRAGGAGIPAFYTPTAYGTLIQLGGTPIKYDSKGQVLLTSEPKEDRLINGRN 184
           PQGTLAERIRAGGAG+PAFYT T YGTL+Q GG+PIKY+  G V + S+P+E R  NG++
Sbjct: 137 PQGTLAERIRAGGAGVPAFYTSTGYGTLVQEGGSPIKYNKDGSVAIASKpreVREFNGQH 196

Query: 185 YVMETAIRGNFALIKAWKADKAGNVIFRKTARNFNETMCRAADTTXXXXXXXXXXXXXDP 364
           +++E AI G+FAL+KAWKAD+AGNVIFRK+ARNFN  MC+AA TT              P
Sbjct: 197 FILEEAITGDFALVKAWKADRAGNVIFRKSARNFNLPMCKAAGTTVVEVEEIVDIGSFAP 256

Query: 365 DHIHVPGIYVDRVLLGEKY 421
           + IH+P IYV R++ GEKY
Sbjct: 257 EDIHIPKIYVHRLIKGEKY 275
>sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid-coenzyme A transferase,
           mitochondrial precursor (3-oxoacid CoA-transferase)
          Length = 521

 Score =  156 bits (394), Expect = 2e-38
 Identities = 78/141 (55%), Positives = 94/141 (66%), Gaps = 2/141 (1%)
 Frame = +2

Query: 5   PQGTLAERIRAGGAGIPAFYTPTAYGTLIQLGGTPIKYDS--KGQVLLTSEPKEDRLING 178
           PQGTLAERIRA GAG+PAFYTPT YGT IQ GG PIKY    KG++ + S+ KE R  NG
Sbjct: 134 PQGTLAERIRAAGAGVPAFYTPTGYGTQIQEGGAPIKYSKTEKGKIEVASKAKETRQFNG 193

Query: 179 RNYVMETAIRGNFALIKAWKADKAGNVIFRKTARNFNETMCRAADTTXXXXXXXXXXXXX 358
            NYVME AI G+FALIKAW+AD  GN+ FR  A NFN  MC+A+  T             
Sbjct: 194 INYVMEEAIWGDFALIKAWRADTLGNIQFRHAAGNFNNPMCKASKCTIVEVEEIVEPGVI 253

Query: 359 DPDHIHVPGIYVDRVLLGEKY 421
            P+ +H+P IY  R++LG+ Y
Sbjct: 254 APNDVHIPSIYCHRLVLGKNY 274
>sp|O34264|SCOA_XANCP Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (Succinyl
           CoA:3-oxoacid CoA-transferase) (OXCT A)
          Length = 242

 Score =  132 bits (331), Expect = 4e-31
 Identities = 66/135 (48%), Positives = 84/135 (62%)
 Frame = +2

Query: 5   PQGTLAERIRAGGAGIPAFYTPTAYGTLIQLGGTPIKYDSKGQVLLTSEPKEDRLINGRN 184
           PQGTLAER+RAGGAGIPAFYT T YGT++  G                  KE R  +G++
Sbjct: 108 PQGTLAERLRAGGAGIPAFYTATGYGTIVAYG------------------KETREFDGKH 149

Query: 185 YVMETAIRGNFALIKAWKADKAGNVIFRKTARNFNETMCRAADTTXXXXXXXXXXXXXDP 364
           YV+ETA++ + ALIKAW+AD AGN++FRKTARNFN     A                 DP
Sbjct: 150 YVLETALQADVALIKAWRADTAGNLVFRKTARNFNPACAMAGRVCIAEVEEIVELGAIDP 209

Query: 365 DHIHVPGIYVDRVLL 409
           D +H+PGIY+DR++L
Sbjct: 210 DQVHLPGIYIDRLVL 224
>sp|P42315|SCOA_BACSU Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
           (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT A)
          Length = 238

 Score =  130 bits (326), Expect = 1e-30
 Identities = 70/137 (51%), Positives = 78/137 (56%)
 Frame = +2

Query: 2   VPQGTLAERIRAGGAGIPAFYTPTAYGTLIQLGGTPIKYDSKGQVLLTSEPKEDRLINGR 181
           VPQGTLAERIRAGGAGIP FYT T  GT I                  +E KE +   GR
Sbjct: 98  VPQGTLAERIRAGGAGIPGFYTATGVGTSI------------------AEGKEHKTFGGR 139

Query: 182 NYVMETAIRGNFALIKAWKADKAGNVIFRKTARNFNETMCRAADTTXXXXXXXXXXXXXD 361
            YV+E  I G+ A++KAWKAD  GN+IFRKTARNFN     A   T             D
Sbjct: 140 TYVLERGITGDVAIVKAWKADTMGNLIFRKTARNFNPIAAMAGKITIAEAEEIVEAGELD 199

Query: 362 PDHIHVPGIYVDRVLLG 412
           PDHIH PGIYV  V+LG
Sbjct: 200 PDHIHTPGIYVQHVVLG 216
>sp|Q9ZLE3|SCOA_HELPJ Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (Succinyl
           CoA:3-oxoacid CoA-transferase) (OXCT A)
          Length = 232

 Score =  128 bits (322), Expect = 4e-30
 Identities = 67/139 (48%), Positives = 81/139 (58%)
 Frame = +2

Query: 5   PQGTLAERIRAGGAGIPAFYTPTAYGTLIQLGGTPIKYDSKGQVLLTSEPKEDRLINGRN 184
           PQGTLAE +RAGGAGIPA+YTPT  GTLI  G                  KE R  NG+ 
Sbjct: 99  PQGTLAENLRAGGAGIPAYYTPTGVGTLIAQG------------------KESREFNGKE 140

Query: 185 YVMETAIRGNFALIKAWKADKAGNVIFRKTARNFNETMCRAADTTXXXXXXXXXXXXXDP 364
           Y++E AI G++ LIKA+K+D  GN++FRKTARNFN     AA                DP
Sbjct: 141 YILERAITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAAKICVAEVEEIVPAGELDP 200

Query: 365 DHIHVPGIYVDRVLLGEKY 421
           D IH+PGIYV  +  GEK+
Sbjct: 201 DEIHLPGIYVQHIYKGEKF 219
>sp|P63649|SCOA_MYCBO Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
           (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT A)
 sp|P63648|SCOA_MYCTU Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A
           (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT A)
          Length = 248

 Score =  126 bits (317), Expect = 2e-29
 Identities = 62/134 (46%), Positives = 80/134 (59%)
 Frame = +2

Query: 5   PQGTLAERIRAGGAGIPAFYTPTAYGTLIQLGGTPIKYDSKGQVLLTSEPKEDRLINGRN 184
           PQGTLAER+RAGG GIPAFYTP   GT +  GG P +YD+ G V + S  KE R  +G  
Sbjct: 99  PQGTLAERLRAGGMGIPAFYTPAGVGTQVADGGLPWRYDASGGVAVVSPAKETREFDGVT 158

Query: 185 YVMETAIRGNFALIKAWKADKAGNVIFRKTARNFNETMCRAADTTXXXXXXXXXXXXXDP 364
           YV+E  IR +FAL+ AW+ D+ GN+++R  A NFN     A   T             DP
Sbjct: 159 YVLERGIRTDFALVHAWQGDRHGNLMYRHAAANFNPECASAGRITIAEVEHLVEPGEIDP 218

Query: 365 DHIHVPGIYVDRVL 406
             +H PG++V RV+
Sbjct: 219 ATVHTPGVFVHRVV 232
>sp|P56006|SCOA_HELPY Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (Succinyl
           CoA:3-oxoacid CoA-transferase) (OXCT A)
          Length = 232

 Score =  126 bits (317), Expect = 2e-29
 Identities = 66/139 (47%), Positives = 80/139 (57%)
 Frame = +2

Query: 5   PQGTLAERIRAGGAGIPAFYTPTAYGTLIQLGGTPIKYDSKGQVLLTSEPKEDRLINGRN 184
           PQGTLAE + AGGAGIPA+YTPT  GTLI  G                  KE R  NG+ 
Sbjct: 99  PQGTLAENLHAGGAGIPAYYTPTGVGTLIAQG------------------KESREFNGKE 140

Query: 185 YVMETAIRGNFALIKAWKADKAGNVIFRKTARNFNETMCRAADTTXXXXXXXXXXXXXDP 364
           Y++E AI G++ LIKA+K+D  GN++FRKTARNFN     AA                DP
Sbjct: 141 YILERAITGDYGLIKAYKSDTLGNLVFRKTARNFNPLCAMAAKICVAEVEEIVPAGELDP 200

Query: 365 DHIHVPGIYVDRVLLGEKY 421
           D IH+PGIYV  +  GEK+
Sbjct: 201 DEIHLPGIYVQHIYKGEKF 219
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,501,327
Number of Sequences: 369166
Number of extensions: 870307
Number of successful extensions: 2304
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2291
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2052714815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)