Planaria EST Database


DrC_01335

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01335
         (858 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BRX9|MARH3_MOUSE  Membrane-associated RING finger prote...    85   3e-16
sp|Q86UD3|MARH3_HUMAN  Membrane-associated RING finger prote...    85   3e-16
sp|Q5XIE5|MARH3_RAT  Membrane-associated RING finger protein...    85   3e-16
sp|Q99M02|MARH2_MOUSE  Membrane-associated RING finger prote...    81   4e-15
sp|Q9P0N8|MARH2_HUMAN  Membrane-associated RING finger prote...    80   6e-15
sp|P90489|MIR2_HHV8  Modulator of immune recognition 2 (MIR2...    54   7e-07
sp|Q9P2E8|MARH4_HUMAN  Membrane-associated RING finger prote...    53   1e-06
sp|Q80TE3|MARH4_MOUSE  Membrane-associated RING finger prote...    53   1e-06
sp|P40318|SSM4_YEAST  Protein SSM4                                 47   5e-05
sp|P32225|VC07_SWPVK  Hypothetical protein C7                      46   2e-04
>sp|Q8BRX9|MARH3_MOUSE Membrane-associated RING finger protein 3 (Membrane-associated
           RING-CH protein III) (MARCH-III)
          Length = 218

 Score = 84.7 bits (208), Expect = 3e-16
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
 Frame = -2

Query: 494 CRICLDNDKENEKLMSPCRCKGTVGLMHSTCLQQWIKISGKEQCEICKCNYDMRKRRADL 315
           CRIC +   + E L+SPC C GT+G +H +CL+ W+  S    CE+C   + + ++   L
Sbjct: 71  CRICHEGSSQ-EDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPL 129

Query: 314 NMWIKH---LFRQKTFIGDLFCFLFLVPCTTIAVFFCFKAAM 198
             W+++      ++T  GD+ CFLF+ P  TI+ + C + A+
Sbjct: 130 VEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAV 171
>sp|Q86UD3|MARH3_HUMAN Membrane-associated RING finger protein 3 (Membrane-associated
           RING-CH protein III) (MARCH-III) (RING finger protein
           173)
          Length = 253

 Score = 84.7 bits (208), Expect = 3e-16
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
 Frame = -2

Query: 494 CRICLDNDKENEKLMSPCRCKGTVGLMHSTCLQQWIKISGKEQCEICKCNYDMRKRRADL 315
           CRIC +   + E L+SPC C GT+G +H +CL+ W+  S    CE+C   + + ++   L
Sbjct: 71  CRICHEGSSQ-EDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPL 129

Query: 314 NMWIKH---LFRQKTFIGDLFCFLFLVPCTTIAVFFCFKAAM 198
             W+++      ++T  GD+ CFLF+ P  TI+ + C + A+
Sbjct: 130 VEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAV 171
>sp|Q5XIE5|MARH3_RAT Membrane-associated RING finger protein 3 (Membrane-associated
           RING-CH protein III) (MARCH-III)
          Length = 253

 Score = 84.7 bits (208), Expect = 3e-16
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
 Frame = -2

Query: 494 CRICLDNDKENEKLMSPCRCKGTVGLMHSTCLQQWIKISGKEQCEICKCNYDMRKRRADL 315
           CRIC +   + E L+SPC C GT+G +H +CL+ W+  S    CE+C   + + ++   L
Sbjct: 71  CRICHEGSSQ-EDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVERKPRPL 129

Query: 314 NMWIKH---LFRQKTFIGDLFCFLFLVPCTTIAVFFCFKAAM 198
             W+++      ++T  GD+ CFLF+ P  TI+ + C + A+
Sbjct: 130 VEWLRNPGPQHEKRTLFGDMVCFLFITPLATISGWLCLRGAV 171
>sp|Q99M02|MARH2_MOUSE Membrane-associated RING finger protein 2 (Membrane-associated
           RING-CH protein II) (MARCH-II)
          Length = 246

 Score = 80.9 bits (198), Expect = 4e-15
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
 Frame = -2

Query: 539 SNVIVGNTSRISMLKCRICLDNDKENEKLMSPCRCKGTVGLMHSTCLQQWIKISGKEQCE 360
           S VI    S+     CRIC +     E L+SPC C GT+G +H +CL++W+  S    CE
Sbjct: 49  STVIRALDSQSDCPFCRICHEG-ANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCE 107

Query: 359 ICKCNYDMRKRRADLNMWIKH---LFRQKTFIGDLFCFLFLVPCTTIAVFFCFKAA 201
           +C   + + KR   L  W+K       ++T   D+ CF+F+ P   I+ + C + A
Sbjct: 108 LCHTEFAVEKRPRPLTEWLKDPGPRTEKRTLCCDMVCFVFITPLAAISGWLCLRGA 163
>sp|Q9P0N8|MARH2_HUMAN Membrane-associated RING finger protein 2 (Membrane-associated
           RING-CH protein II) (MARCH-II) (RING finger protein 172)
          Length = 246

 Score = 80.5 bits (197), Expect = 6e-15
 Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
 Frame = -2

Query: 494 CRICLDNDKENEKLMSPCRCKGTVGLMHSTCLQQWIKISGKEQCEICKCNYDMRKRRADL 315
           CRIC +     E L+SPC C GT+G +H +CL++W+  S    CE+C   + + KR   L
Sbjct: 64  CRICHEG-ANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPL 122

Query: 314 NMWIKH---LFRQKTFIGDLFCFLFLVPCTTIAVFFCFKAA 201
             W+K       ++T   D+ CFLF+ P   I+ + C + A
Sbjct: 123 TEWLKDPGPRTEKRTLCCDMVCFLFITPLAAISGWLCLRGA 163
>sp|P90489|MIR2_HHV8 Modulator of immune recognition 2 (MIR2) (IE1A protein) (ORF K5)
          Length = 256

 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
 Frame = -2

Query: 494 CRICLDNDKENEKLMSPCRCKGTVGLMHSTCLQQWIKISGKEQCEICKCNYDMRKR-RAD 318
           C IC   ++   + + PC C G + ++H  CL  W+ +S    C++C+  Y  R + R+ 
Sbjct: 15  CWIC--REEVGNEGIHPCACTGELDVVHPQCLSTWLTVSRNTACQMCRVIYRTRTQWRSR 72

Query: 317 LNMWIKHLFRQKTFIGDLFCFLFLVPCTTIAVFFC-FKAAMFLFSPTG 177
           LN+W   + RQ+ F  +LF  + +V    + V  C +   + L +P G
Sbjct: 73  LNLW-PEMERQEIF--ELFLLMSVVVAGLVGVALCTWTLLVILTAPAG 117
>sp|Q9P2E8|MARH4_HUMAN Membrane-associated RING finger protein 4 (Membrane-associated
           RING-CH protein IV) (MARCH-IV) (RING finger protein 174)
          Length = 410

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 23/51 (45%), Positives = 29/51 (56%)
 Frame = -2

Query: 494 CRICLDNDKENEKLMSPCRCKGTVGLMHSTCLQQWIKISGKEQCEICKCNY 342
           CRIC    ++ E L+SPCRC G+V   H  CL +WI   G   CE+C   Y
Sbjct: 163 CRICFQGPEQGE-LLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 212
>sp|Q80TE3|MARH4_MOUSE Membrane-associated RING finger protein 4 (Membrane-associated
           RING-CH protein IV) (MARCH-IV)
          Length = 408

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 23/51 (45%), Positives = 29/51 (56%)
 Frame = -2

Query: 494 CRICLDNDKENEKLMSPCRCKGTVGLMHSTCLQQWIKISGKEQCEICKCNY 342
           CRIC    ++ E L+SPCRC G+V   H  CL +WI   G   CE+C   Y
Sbjct: 162 CRICFQGPEQGE-LLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 211
>sp|P40318|SSM4_YEAST Protein SSM4
          Length = 1319

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
 Frame = -2

Query: 494 CRICLDNDKENEKLMSPCRCKGTVGLMHSTCLQQWI--------KISGKEQCEIC 354
           CRIC     E+  L  PC+C+G++  MH +CL +W+        K     +C+IC
Sbjct: 39  CRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDIC 93
>sp|P32225|VC07_SWPVK Hypothetical protein C7
          Length = 155

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = -2

Query: 494 CRICLDNDKENEKLMSPCRCKGTVGLMHSTCLQQWIKISGKEQCEICKCNYDMRKRRADL 315
           C IC D D   EK  + C CK    ++H  C+++WI+ S +  C++C   Y++   R   
Sbjct: 5   CWICKD-DYSIEK--NYCNCKNEYKVVHDECMKKWIQYSRERSCKLCNKEYNIISVRKPF 61

Query: 314 NMW---IKHLFRQKTFIGDLFCFLFLV 243
           + W   IK   +       LF   F++
Sbjct: 62  SQWVFSIKDCKKSAILYATLFLCTFII 88
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,644,550
Number of Sequences: 369166
Number of extensions: 1927878
Number of successful extensions: 5043
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5028
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)