Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01329
(780 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain 33 0.67
sp|O25300|LEP_HELPY Signal peptidase I (SPase I) (Leader pe... 30 9.7
>sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain
Length = 1070
Score = 33.5 bits (75), Expect = 0.67
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -3
Query: 139 YKNIYKNYRISDTDKNRIINCYQNGENKELVSRFLN 32
Y+ IY Y I + KN++INC++ +NK L+S+ N
Sbjct: 273 YEEIYYFY-ILKSKKNKVINCFKKNKNKSLLSQIKN 307
>sp|O25300|LEP_HELPY Signal peptidase I (SPase I) (Leader peptidase I)
Length = 290
Score = 29.6 bits (65), Expect = 9.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 109 SDTDKNRIINCYQNGENKELVSRFLNINP 23
SDTDKN I Y N KE + + +NP
Sbjct: 130 SDTDKNYIAKHYPNAMTKEFMGKIFVLNP 158
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,605,442
Number of Sequences: 369166
Number of extensions: 1371050
Number of successful extensions: 2985
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2984
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)