Planarian EST Database


Dr_sW_003_H05

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_003_H05
         (780 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P57528|EX5C_BUCAI  Exodeoxyribonuclease V gamma chain           33   0.67 
sp|O25300|LEP_HELPY  Signal peptidase I (SPase I) (Leader pe...    30   9.7  
>sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain
          Length = 1070

 Score = 33.5 bits (75), Expect = 0.67
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -3

Query: 139 YKNIYKNYRISDTDKNRIINCYQNGENKELVSRFLN 32
           Y+ IY  Y I  + KN++INC++  +NK L+S+  N
Sbjct: 273 YEEIYYFY-ILKSKKNKVINCFKKNKNKSLLSQIKN 307
>sp|O25300|LEP_HELPY Signal peptidase I (SPase I) (Leader peptidase I)
          Length = 290

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 109 SDTDKNRIINCYQNGENKELVSRFLNINP 23
           SDTDKN I   Y N   KE + +   +NP
Sbjct: 130 SDTDKNYIAKHYPNAMTKEFMGKIFVLNP 158
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,605,442
Number of Sequences: 369166
Number of extensions: 1371050
Number of successful extensions: 2985
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2984
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)