Planaria EST Database


DrC_01326

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01326
         (437 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27743|ACVS_NOCLA  N-(5-amino-5-carboxypentanoyl)-L-cyste...    32   0.78 
sp|Q14246|EMR1_HUMAN  EGF-like module containing mucin-like ...    32   0.78 
sp|P43691|GATA4_CHICK  Transcription factor GATA-4 (GATA-bin...    30   3.0  
sp|Q9Y2K9|STB5L_HUMAN  Syntaxin binding protein 5-like (Tomo...    29   3.9  
sp|Q9PPZ6|PRIM_UREPA  DNA primase                                  29   5.1  
sp|Q13017|RHG05_HUMAN  Rho-GTPase-activating protein 5 (p190-B)    28   6.6  
sp|P97393|RHG05_MOUSE  Rho-GTPase-activating protein 5 (p190-B)    28   6.6  
sp|Q5DQR4|STB5L_MOUSE  Syntaxin binding protein 5-like (Tomo...    28   6.6  
sp|Q06597|ACR2_YEAST  Arsenical-resistance protein ACR2            28   8.6  
sp|Q9KC63|THD1_BACHD  Threonine dehydratase biosynthetic (Th...    28   8.6  
>sp|P27743|ACVS_NOCLA N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase
           (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine
           synthetase) (ACV synthetase) (ACVS)
          Length = 3649

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 110 DSDKYCNNIYTTLNKLCENKSKVVCGLYYVKHKIACNER--QVAFWTICGPIYKAINDGC 283
           D DK  N ++  + +   ++  VVCG   + ++   NER  Q A W I GP+   +  G 
Sbjct: 247 DEDKRLNELFEDVVRRAPDREAVVCGDVRLTYR-EVNERANQFAHWLIQGPV--RVRPGA 303

Query: 284 TSVKELEKTDIFV 322
                L+K+D+ V
Sbjct: 304 LIGLYLDKSDLGV 316
>sp|Q14246|EMR1_HUMAN EGF-like module containing mucin-like hormone receptor-like 1
           precursor (Cell surface glycoprotein EMR1) (EMR1 hormone
           receptor)
          Length = 886

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 104 YVDSDKYCNNIYTTLNKLCENKSKVVCGLYYVKHKIACNERQVAFWT 244
           YV      NNI++ L+K+CENK+ VV  L           +Q++ WT
Sbjct: 346 YVSFCAQINNIFSVLDKVCENKTTVV-SLKNTTESFVPVLKQISTWT 391
>sp|P43691|GATA4_CHICK Transcription factor GATA-4 (GATA-binding factor 4)
          Length = 380

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 360 NSIYITPRSTAPSTKMSVFSNSLTDVHPSLMAL*IGPQIVQKATCRSLQA 211
           +S Y  P   + +  +S  S   + +HP++ AL + PQ  Q A  +S QA
Sbjct: 309 SSHYGHPSPISQAFSVSAMSGHGSSIHPAISALKLSPQAYQSAISQSPQA 358
>sp|Q9Y2K9|STB5L_HUMAN Syntaxin binding protein 5-like (Tomosyn-2) (LLGL4 homolog)
          Length = 1186

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 2   LSLVNAWDPPKPPVRSPE--VCLDVYQPAAKLCNKRYVDSDKYCNNIYTTLNKLCENKSK 175
           +S VN W P +PP R  +   C+++  P     N+     + Y  +  ++++ + ++  +
Sbjct: 775 VSKVNRWGPGRPPFRKAQSAACMEISLPVTTEENR----ENSYNRSRSSSISSIDKDSKE 830

Query: 176 VVCGLYYV 199
            +  LY++
Sbjct: 831 AITALYFM 838
>sp|Q9PPZ6|PRIM_UREPA DNA primase
          Length = 641

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 373 NILTEFDLYHTKINCSVNENVCFL*FFNRCASIINGFINWST 248
           NI+ +F LYH KIN  +     F+ F N+  S     IN  T
Sbjct: 517 NIIEDFYLYHFKINNILKNTDSFIEFINKNYSKYTNVINQLT 558
>sp|Q13017|RHG05_HUMAN Rho-GTPase-activating protein 5 (p190-B)
          Length = 1499

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 56  VCLDVYQPAAKLCNKRYVDSDKYCNNIYTTLNK 154
           +C+DV Q     CN+++ D  K+ NN++  L+K
Sbjct: 161 LCIDVSQG----CNRKFDDQLKFVNNLFVQLSK 189
>sp|P97393|RHG05_MOUSE Rho-GTPase-activating protein 5 (p190-B)
          Length = 1501

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 56  VCLDVYQPAAKLCNKRYVDSDKYCNNIYTTLNK 154
           +C+DV Q     CN+++ D  K+ NN++  L+K
Sbjct: 161 LCIDVSQG----CNRKFDDQLKFVNNLFVQLSK 189
>sp|Q5DQR4|STB5L_MOUSE Syntaxin binding protein 5-like (Tomosyn-2)
          Length = 1185

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 2    LSLVNAWDPPKPPVRSPE--VCLDVYQPAAKLCNKRYVDSDKYCNNIYTTLNKLCENKSK 175
            +S VN W P +PP R  +   C+++  P            + Y  +  ++++ + ++  +
Sbjct: 774  VSKVNRWGPGRPPFRKAQSAACMEISLPV----TTEETRENSYNRSRSSSISSIDKDSKE 829

Query: 176  VVCGLYYVKHKIACNERQVA 235
             +  LY+++     N+  V+
Sbjct: 830  AITALYFMESFARKNDSTVS 849
>sp|Q06597|ACR2_YEAST Arsenical-resistance protein ACR2
          Length = 130

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 295 FNRCASIINGFINWSTNCPESHLSLI 218
           F  C  ++ GF  W T+C ES+L LI
Sbjct: 103 FESCI-LVGGFYAWETHCRESNLKLI 127
>sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic (Threonine deaminase)
          Length = 415

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 290 VKELEKTDIFVDGAV--DLGVI*IEFCQDI 373
           V ELEK D FVDGA    +G I  E CQ I
Sbjct: 224 VIELEKIDKFVDGAAVKKVGEIPFEICQKI 253
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,412,574
Number of Sequences: 369166
Number of extensions: 956073
Number of successful extensions: 2562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2562
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)