Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_G14
(437 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27743|ACVS_NOCLA N-(5-amino-5-carboxypentanoyl)-L-cyste... 32 0.78
sp|Q14246|EMR1_HUMAN EGF-like module containing mucin-like ... 32 0.78
sp|P43691|GATA4_CHICK Transcription factor GATA-4 (GATA-bin... 30 3.0
sp|Q9Y2K9|STB5L_HUMAN Syntaxin binding protein 5-like (Tomo... 29 3.9
sp|Q9PPZ6|PRIM_UREPA DNA primase 29 5.1
sp|Q13017|RHG05_HUMAN Rho-GTPase-activating protein 5 (p190-B) 28 6.6
sp|P97393|RHG05_MOUSE Rho-GTPase-activating protein 5 (p190-B) 28 6.6
sp|Q5DQR4|STB5L_MOUSE Syntaxin binding protein 5-like (Tomo... 28 6.6
sp|Q06597|ACR2_YEAST Arsenical-resistance protein ACR2 28 8.6
sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic (Th... 28 8.6
>sp|P27743|ACVS_NOCLA N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase
(Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine
synthetase) (ACV synthetase) (ACVS)
Length = 3649
Score = 31.6 bits (70), Expect = 0.78
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 110 DSDKYCNNIYTTLNKLCENKSKVVCGLYYVKHKIACNER--QVAFWTICGPIYKAINDGC 283
D DK N ++ + + ++ VVCG + ++ NER Q A W I GP+ + G
Sbjct: 247 DEDKRLNELFEDVVRRAPDREAVVCGDVRLTYR-EVNERANQFAHWLIQGPV--RVRPGA 303
Query: 284 TSVKELEKTDIFV 322
L+K+D+ V
Sbjct: 304 LIGLYLDKSDLGV 316
>sp|Q14246|EMR1_HUMAN EGF-like module containing mucin-like hormone receptor-like 1
precursor (Cell surface glycoprotein EMR1) (EMR1 hormone
receptor)
Length = 886
Score = 31.6 bits (70), Expect = 0.78
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 104 YVDSDKYCNNIYTTLNKLCENKSKVVCGLYYVKHKIACNERQVAFWT 244
YV NNI++ L+K+CENK+ VV L +Q++ WT
Sbjct: 346 YVSFCAQINNIFSVLDKVCENKTTVV-SLKNTTESFVPVLKQISTWT 391
>sp|P43691|GATA4_CHICK Transcription factor GATA-4 (GATA-binding factor 4)
Length = 380
Score = 29.6 bits (65), Expect = 3.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 360 NSIYITPRSTAPSTKMSVFSNSLTDVHPSLMAL*IGPQIVQKATCRSLQA 211
+S Y P + + +S S + +HP++ AL + PQ Q A +S QA
Sbjct: 309 SSHYGHPSPISQAFSVSAMSGHGSSIHPAISALKLSPQAYQSAISQSPQA 358
>sp|Q9Y2K9|STB5L_HUMAN Syntaxin binding protein 5-like (Tomosyn-2) (LLGL4 homolog)
Length = 1186
Score = 29.3 bits (64), Expect = 3.9
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 2 LSLVNAWDPPKPPVRSPE--VCLDVYQPAAKLCNKRYVDSDKYCNNIYTTLNKLCENKSK 175
+S VN W P +PP R + C+++ P N+ + Y + ++++ + ++ +
Sbjct: 775 VSKVNRWGPGRPPFRKAQSAACMEISLPVTTEENR----ENSYNRSRSSSISSIDKDSKE 830
Query: 176 VVCGLYYV 199
+ LY++
Sbjct: 831 AITALYFM 838
>sp|Q9PPZ6|PRIM_UREPA DNA primase
Length = 641
Score = 28.9 bits (63), Expect = 5.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 373 NILTEFDLYHTKINCSVNENVCFL*FFNRCASIINGFINWST 248
NI+ +F LYH KIN + F+ F N+ S IN T
Sbjct: 517 NIIEDFYLYHFKINNILKNTDSFIEFINKNYSKYTNVINQLT 558
>sp|Q13017|RHG05_HUMAN Rho-GTPase-activating protein 5 (p190-B)
Length = 1499
Score = 28.5 bits (62), Expect = 6.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 56 VCLDVYQPAAKLCNKRYVDSDKYCNNIYTTLNK 154
+C+DV Q CN+++ D K+ NN++ L+K
Sbjct: 161 LCIDVSQG----CNRKFDDQLKFVNNLFVQLSK 189
>sp|P97393|RHG05_MOUSE Rho-GTPase-activating protein 5 (p190-B)
Length = 1501
Score = 28.5 bits (62), Expect = 6.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 56 VCLDVYQPAAKLCNKRYVDSDKYCNNIYTTLNK 154
+C+DV Q CN+++ D K+ NN++ L+K
Sbjct: 161 LCIDVSQG----CNRKFDDQLKFVNNLFVQLSK 189
>sp|Q5DQR4|STB5L_MOUSE Syntaxin binding protein 5-like (Tomosyn-2)
Length = 1185
Score = 28.5 bits (62), Expect = 6.6
Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 2 LSLVNAWDPPKPPVRSPE--VCLDVYQPAAKLCNKRYVDSDKYCNNIYTTLNKLCENKSK 175
+S VN W P +PP R + C+++ P + Y + ++++ + ++ +
Sbjct: 774 VSKVNRWGPGRPPFRKAQSAACMEISLPV----TTEETRENSYNRSRSSSISSIDKDSKE 829
Query: 176 VVCGLYYVKHKIACNERQVA 235
+ LY+++ N+ V+
Sbjct: 830 AITALYFMESFARKNDSTVS 849
>sp|Q06597|ACR2_YEAST Arsenical-resistance protein ACR2
Length = 130
Score = 28.1 bits (61), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 295 FNRCASIINGFINWSTNCPESHLSLI 218
F C ++ GF W T+C ES+L LI
Sbjct: 103 FESCI-LVGGFYAWETHCRESNLKLI 127
>sp|Q9KC63|THD1_BACHD Threonine dehydratase biosynthetic (Threonine deaminase)
Length = 415
Score = 28.1 bits (61), Expect = 8.6
Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 290 VKELEKTDIFVDGAV--DLGVI*IEFCQDI 373
V ELEK D FVDGA +G I E CQ I
Sbjct: 224 VIELEKIDKFVDGAAVKKVGEIPFEICQKI 253
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,412,574
Number of Sequences: 369166
Number of extensions: 956073
Number of successful extensions: 2562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2562
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2244666600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)