Planaria EST Database


DrC_01323

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01323
         (891 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K991|TIG_BUCAP  Trigger factor (TF)                           33   1.4  
sp|P40107|GOG5_YEAST  GDP-mannose transporter                      31   5.3  
sp|P57546|TIG_BUCAI  Trigger factor (TF)                           30   6.9  
sp|P47637|Y397_MYCGE  Hypothetical protein MG397                   30   9.0  
>sp|Q8K991|TIG_BUCAP Trigger factor (TF)
          Length = 442

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
 Frame = -1

Query: 675 QTRRKLHKKIKFISLKLVKRIIF---KNCLLQKCHKNAFQMYLKWKIIEIISQLVVSSKF 505
           Q   ++ K IK I +  + ++ +   KN +++K  K+  Q +L+    +II QL++ +  
Sbjct: 246 QENIEIEKNIKTIKINKLSKLNYQTIKNNIIEKI-KSLTQNHLQ---NQIIKQLIIKNPI 301

Query: 504 KITAFIVVNNISITTQKIIQSYKHTQEVTQIDRAI*TVQEMTVLKNSYRKP*ADVNLHTR 325
            I   ++    +    K I+ YK  QE               +LK  Y       NL ++
Sbjct: 302 NIPPTLLREETNFLRNKFIKEYKEKQE--------------NILKKKYH-----TNLESK 342

Query: 324 FLTMKYFKLFVKLCVK 277
             T  + KL ++  ++
Sbjct: 343 AKTRLHIKLIIEKIIR 358
>sp|P40107|GOG5_YEAST GDP-mannose transporter
          Length = 337

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +2

Query: 278 FTHNLTNNLKYFIVRKRVCKLTSAYGFR*EFFNTVISCTV*IARSICV 421
           FT+ +T+ L   I+RKR+ KLT+   F   F+N V++  + +  S CV
Sbjct: 189 FTNCITSALFVLIMRKRI-KLTNFKDFDTMFYNNVLALPILLLFSFCV 235
>sp|P57546|TIG_BUCAI Trigger factor (TF)
          Length = 442

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 36/122 (29%)
 Frame = -1

Query: 669 RRKLHKKI-----KFISLKLVKRIIFKNCLL------QKCHKNAFQMYLKW------KII 541
           +  LH +I     K++  +++++I+ KN LL      QK  KN ++ Y K        I+
Sbjct: 272 KNNLHSQINIITDKYLENQIIQKIVEKNILLLPPLLFQKEIKNLYKQYTKQYQEENSNIL 331

Query: 540 E-------------------IISQLVVSSKFKITAFIVVNNISITTQKIIQSYKHTQEVT 418
           E                   II Q+++++K     F   NNI    +KI  +YK+  E+ 
Sbjct: 332 EKKYHMSLDSEVKKRLYFQIIIEQIILNNKL----FADENNIQKLIKKISSNYKNPMEII 387

Query: 417 QI 412
           ++
Sbjct: 388 KL 389
>sp|P47637|Y397_MYCGE Hypothetical protein MG397
          Length = 566

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -1

Query: 687 LINTQTRRKLHKKIKFISLKLVKRIIFKNCL-LQKCHKNAFQMYLKWKIIEIISQL--VV 517
           +IN+Q   KLH+ I  I++KL     F N L L  C +N  +      + E IS L   V
Sbjct: 249 VINSQDLLKLHELINNITIKLKDCTNFLNNLNLMLCERNMDE------VQEAISWLFQAV 302

Query: 516 SSKFKITAFIVVNNISITTQKIIQSYKHTQEV 421
           SSK K    +V N      Q  IQ Y+   E+
Sbjct: 303 SSKEKSINLVVENIDDFRNQ--IQQYEKKNEL 332
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,904,016
Number of Sequences: 369166
Number of extensions: 1799907
Number of successful extensions: 3279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3278
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)