Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_G08
(891 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K991|TIG_BUCAP Trigger factor (TF) 33 1.4
sp|P40107|GOG5_YEAST GDP-mannose transporter 31 5.3
sp|P57546|TIG_BUCAI Trigger factor (TF) 30 6.9
sp|P47637|Y397_MYCGE Hypothetical protein MG397 30 9.0
>sp|Q8K991|TIG_BUCAP Trigger factor (TF)
Length = 442
Score = 32.7 bits (73), Expect = 1.4
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Frame = -1
Query: 675 QTRRKLHKKIKFISLKLVKRIIF---KNCLLQKCHKNAFQMYLKWKIIEIISQLVVSSKF 505
Q ++ K IK I + + ++ + KN +++K K+ Q +L+ +II QL++ +
Sbjct: 246 QENIEIEKNIKTIKINKLSKLNYQTIKNNIIEKI-KSLTQNHLQ---NQIIKQLIIKNPI 301
Query: 504 KITAFIVVNNISITTQKIIQSYKHTQEVTQIDRAI*TVQEMTVLKNSYRKP*ADVNLHTR 325
I ++ + K I+ YK QE +LK Y NL ++
Sbjct: 302 NIPPTLLREETNFLRNKFIKEYKEKQE--------------NILKKKYH-----TNLESK 342
Query: 324 FLTMKYFKLFVKLCVK 277
T + KL ++ ++
Sbjct: 343 AKTRLHIKLIIEKIIR 358
>sp|P40107|GOG5_YEAST GDP-mannose transporter
Length = 337
Score = 30.8 bits (68), Expect = 5.3
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 278 FTHNLTNNLKYFIVRKRVCKLTSAYGFR*EFFNTVISCTV*IARSICV 421
FT+ +T+ L I+RKR+ KLT+ F F+N V++ + + S CV
Sbjct: 189 FTNCITSALFVLIMRKRI-KLTNFKDFDTMFYNNVLALPILLLFSFCV 235
>sp|P57546|TIG_BUCAI Trigger factor (TF)
Length = 442
Score = 30.4 bits (67), Expect = 6.9
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 36/122 (29%)
Frame = -1
Query: 669 RRKLHKKI-----KFISLKLVKRIIFKNCLL------QKCHKNAFQMYLKW------KII 541
+ LH +I K++ +++++I+ KN LL QK KN ++ Y K I+
Sbjct: 272 KNNLHSQINIITDKYLENQIIQKIVEKNILLLPPLLFQKEIKNLYKQYTKQYQEENSNIL 331
Query: 540 E-------------------IISQLVVSSKFKITAFIVVNNISITTQKIIQSYKHTQEVT 418
E II Q+++++K F NNI +KI +YK+ E+
Sbjct: 332 EKKYHMSLDSEVKKRLYFQIIIEQIILNNKL----FADENNIQKLIKKISSNYKNPMEII 387
Query: 417 QI 412
++
Sbjct: 388 KL 389
>sp|P47637|Y397_MYCGE Hypothetical protein MG397
Length = 566
Score = 30.0 bits (66), Expect = 9.0
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = -1
Query: 687 LINTQTRRKLHKKIKFISLKLVKRIIFKNCL-LQKCHKNAFQMYLKWKIIEIISQL--VV 517
+IN+Q KLH+ I I++KL F N L L C +N + + E IS L V
Sbjct: 249 VINSQDLLKLHELINNITIKLKDCTNFLNNLNLMLCERNMDE------VQEAISWLFQAV 302
Query: 516 SSKFKITAFIVVNNISITTQKIIQSYKHTQEV 421
SSK K +V N Q IQ Y+ E+
Sbjct: 303 SSKEKSINLVVENIDDFRNQ--IQQYEKKNEL 332
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,904,016
Number of Sequences: 369166
Number of extensions: 1799907
Number of successful extensions: 3279
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3278
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)