Planaria EST Database


DrC_01320

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01320
         (706 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P21522|ROA1_SCHAM  Heterogeneous nuclear ribonucleoprotei...   140   3e-33
sp|P07909|ROA1_DROME  Heterogeneous nuclear ribonucleoprotei...   131   2e-30
sp|P51990|RO22_XENLA  Heterogeneous nuclear ribonucleoprotei...   129   6e-30
sp|P22626|ROA2_HUMAN  Heterogeneous nuclear ribonucleoprotei...   128   1e-29
sp|O88569|ROA2_MOUSE  Heterogeneous nuclear ribonucleoprotei...   128   1e-29
sp|P51989|RO21_XENLA  Heterogeneous nuclear ribonucleoprotei...   128   2e-29
sp|P17130|ROA1_XENLA  Heterogeneous nuclear ribonucleoprotei...   127   4e-29
sp|P48810|RB87F_DROME  Heterogeneous nuclear ribonucleoprote...   126   5e-29
sp|Q02926|RB97D_DROME  Ribonucleoprotein RB97D                    125   1e-28
sp|Q28521|ROA1_MACMU  Heterogeneous nuclear ribonucleoprotei...   125   1e-28
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
          Length = 342

 Score =  140 bits (354), Expect = 3e-33
 Identities = 70/118 (59%), Positives = 88/118 (74%), Gaps = 1/118 (0%)
 Frame = +2

Query: 35  ERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDD 214
           E  +KLFIGGL  +TT+ESLK  + QWGEIVDVVVM+DP+T +SRGFGF+TYS A  VDD
Sbjct: 14  EHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDD 73

Query: 215 AQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEY 385
           AQ  RPH+VDG  V+ KRA+P+ +   PE  ATV +LFVG +K  +  +DLR YF +Y
Sbjct: 74  AQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQY 131

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 31/81 (38%), Positives = 49/81 (60%)
 Frame = +2

Query: 44  KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 223
           KKLF+GG+  +  E  L+ ++ Q+G +V   ++ D +T K RGF FV + D   VD    
Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICL 167

Query: 224 NRPHEVDGIKVDSKRAMPKED 286
           +R H++ G  +D K+A+PK D
Sbjct: 168 SRNHQIRGKHIDVKKALPKGD 188
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core protein
           A1-A) (PEN repeat clone P9)
          Length = 365

 Score =  131 bits (330), Expect = 2e-30
 Identities = 63/118 (53%), Positives = 87/118 (73%), Gaps = 1/118 (0%)
 Frame = +2

Query: 35  ERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDD 214
           E  +KLFIGGL  +TT+E+LK  + +WG IVDVVVM+DP+T +SRGFGF+TYS +S +D+
Sbjct: 28  EHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDE 87

Query: 215 AQGNRPHEVDGIKVDSKRAMPKED-TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEY 385
           AQ +RPH++DG  V+ KRA+P++D  SP   ATV +LFVG LK +     +R YF  +
Sbjct: 88  AQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHF 145

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 32/81 (39%), Positives = 52/81 (64%)
 Frame = +2

Query: 44  KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 223
           KKLF+G L     E+S++ ++  +G IVD+ ++ D +TGK RGF FV + D   VD    
Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVL 181

Query: 224 NRPHEVDGIKVDSKRAMPKED 286
            + H+++G  VD K+A+PK++
Sbjct: 182 QKQHQLNGKMVDVKKALPKQN 202
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 (hnRNP A2(B))
          Length = 358

 Score =  129 bits (325), Expect = 6e-30
 Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 1/118 (0%)
 Frame = +2

Query: 35  ERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDD 214
           E+ +KLFIGGL  +TTEESL+ FY QWG++ D VVMRDP + +SRGFGFVT+S  + VD 
Sbjct: 6   EQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDA 65

Query: 215 AQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEY 385
           A   RPH +DG  V+ KRA+ +E+++ P  H TV +LFVG +K +     LR+YF EY
Sbjct: 66  AMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEY 123

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 31/92 (33%), Positives = 54/92 (58%)
 Frame = +2

Query: 44  KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 223
           KKLF+GG+   T E  L+ ++ ++G+I    ++ D Q+GK RGFGFVT++D   VD    
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVL 159

Query: 224 NRPHEVDGIKVDSKRAMPKEDTSPEFHATVNR 319
            + H ++G   + ++A+ K++     +   NR
Sbjct: 160 QKYHTINGHNAEVRKALSKQEMQDVQNTRNNR 191
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
           B1)
          Length = 353

 Score =  128 bits (322), Expect = 1e-29
 Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
 Frame = +2

Query: 35  ERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDD 214
           E+ +KLFIGGL  +TTEESL+ +Y QWG++ D VVMRDP + +SRGFGFVT+S  + VD 
Sbjct: 18  EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77

Query: 215 AQGNRPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVVADDLRQYFGEY 385
           A   RPH +DG  V+ KRA+ +E++  P  H TV +LFVG +K +     LR YF EY
Sbjct: 78  AMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 135

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 28/81 (34%), Positives = 51/81 (62%)
 Frame = +2

Query: 44  KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 223
           KKLF+GG+   T E  L+ ++ ++G+I  + ++ D Q+GK RGFGFVT+ D   VD    
Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 171

Query: 224 NRPHEVDGIKVDSKRAMPKED 286
            + H ++G   + ++A+ +++
Sbjct: 172 QKYHTINGHNAEVRKALSRQE 192
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
           B1)
          Length = 341

 Score =  128 bits (322), Expect = 1e-29
 Identities = 62/118 (52%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
 Frame = +2

Query: 35  ERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDD 214
           E+ +KLFIGGL  +TTEESL+ +Y QWG++ D VVMRDP + +SRGFGFVT+S  + VD 
Sbjct: 6   EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 65

Query: 215 AQGNRPHEVDGIKVDSKRAMPKEDT-SPEFHATVNRLFVGRLKRNVVADDLRQYFGEY 385
           A   RPH +DG  V+ KRA+ +E++  P  H TV +LFVG +K +     LR YF EY
Sbjct: 66  AMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEY 123

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 28/81 (34%), Positives = 51/81 (62%)
 Frame = +2

Query: 44  KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 223
           KKLF+GG+   T E  L+ ++ ++G+I  + ++ D Q+GK RGFGFVT+ D   VD    
Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVL 159

Query: 224 NRPHEVDGIKVDSKRAMPKED 286
            + H ++G   + ++A+ +++
Sbjct: 160 QKYHTINGHNAEVRKALSRQE 180
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 (hnRNP A2(A))
          Length = 346

 Score =  128 bits (321), Expect = 2e-29
 Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
 Frame = +2

Query: 35  ERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDD 214
           E+ +KLFIGGL  +TTEESL+ +Y QWG + D VVMRDP + +SRGFGFVT+S  + VD 
Sbjct: 6   EQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDA 65

Query: 215 AQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEY 385
           A   RPH +DG  V+ KRA+ +E+++ P  H TV +LFVG +K +     LR+YF EY
Sbjct: 66  AMATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEY 123

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 30/92 (32%), Positives = 53/92 (57%)
 Frame = +2

Query: 44  KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 223
           KKLF+GG+   T E  L+ ++ ++G+I  + ++ D Q+GK RGF FVT+ D   VD    
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVL 159

Query: 224 NRPHEVDGIKVDSKRAMPKEDTSPEFHATVNR 319
            + H ++G   + ++A+ K++     +   NR
Sbjct: 160 QKYHTINGHNAEVRKALSKQEMQDVQNTRNNR 191
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP A1)
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score =  127 bits (318), Expect = 4e-29
 Identities = 63/121 (52%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
 Frame = +2

Query: 26  NIDERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASS 205
           N  E+ +KLFIGGL  +TT+ESL+  + QWG + D VVMRDP + +SRGFGFVTY     
Sbjct: 8   NEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDE 67

Query: 206 VDDAQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGE 382
           VD A   RPH+VDG  V+ KRA+ +ED+S P  H TV ++FVG +K +   D LR+YF +
Sbjct: 68  VDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQ 127

Query: 383 Y 385
           Y
Sbjct: 128 Y 128

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 29/81 (35%), Positives = 49/81 (60%)
 Frame = +2

Query: 44  KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 223
           KK+F+GG+   T E+ L+ ++ Q+G+I  + +M D  +GK RGF FVT+ D  SVD    
Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVI 164

Query: 224 NRPHEVDGIKVDSKRAMPKED 286
            + H V+      ++A+ K++
Sbjct: 165 QKYHTVNNHNSQVRKALSKQE 185
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1 protein) (P11
           protein)
          Length = 385

 Score =  126 bits (317), Expect = 5e-29
 Identities = 60/118 (50%), Positives = 88/118 (74%), Gaps = 1/118 (0%)
 Frame = +2

Query: 35  ERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDD 214
           E+ +KLFIGGL  +TT++ LK  + +WG IVDVVVM+DP+T +SRGFGF+TYS +  +D+
Sbjct: 21  EQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDN 80

Query: 215 AQGNRPHEVDGIKVDSKRAMPKED-TSPEFHATVNRLFVGRLKRNVVADDLRQYFGEY 385
           AQ  RPH++DG  V+ KRA+P+++  SP   ATV +LFVG L+ +   + LR+YF ++
Sbjct: 81  AQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDF 138

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 31/81 (38%), Positives = 47/81 (58%)
 Frame = +2

Query: 44  KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 223
           KKLF+GGL     EE L+ ++  +G+IV V ++ D  TGK RGF F+ + D   VD    
Sbjct: 115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIIL 174

Query: 224 NRPHEVDGIKVDSKRAMPKED 286
            + H +    +D K+A+ K+D
Sbjct: 175 QKTHSIKNKTLDVKKAIAKQD 195
>sp|Q02926|RB97D_DROME Ribonucleoprotein RB97D
          Length = 471

 Score =  125 bits (314), Expect = 1e-28
 Identities = 66/118 (55%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
 Frame = +2

Query: 35  ERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDD 214
           E  +KLFIGGL   TTEE+LK FY QWG++VDVVVMRD  T +SRGFGF+TY+ +  VD 
Sbjct: 29  EHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDR 88

Query: 215 AQGNRPHEVDGIKVDSKRAMPK-EDTSPEFHATVNRLFVGRLKRNVVADDLRQYFGEY 385
           AQ NRPH +DG  V++KRA+P+ E  S E + +V +LFVG LK N   + LR+YF ++
Sbjct: 89  AQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQF 146

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)
 Frame = +2

Query: 44  KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 223
           KKLF+GGL     EE L+ ++ Q+G +V V ++ D  TGK RGF FV + D  +VD A  
Sbjct: 123 KKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAIL 182

Query: 224 NRPHEVDGIKVDSKRAM 274
            + H +  + VD K+++
Sbjct: 183 KKQHAIKYVHVDVKKSI 199
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing
           protein) (Single-strand binding protein) (hnRNP core
           protein A1)
          Length = 320

 Score =  125 bits (313), Expect = 1e-28
 Identities = 61/118 (51%), Positives = 80/118 (67%), Gaps = 1/118 (0%)
 Frame = +2

Query: 35  ERGKKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDD 214
           E+ +KLFIGGL  +TT+ESL+  + QWG + D VVMRDP T +SRGFGFVTY+    VD 
Sbjct: 11  EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDA 70

Query: 215 AQGNRPHEVDGIKVDSKRAMPKEDTS-PEFHATVNRLFVGRLKRNVVADDLRQYFGEY 385
           A   RPH+VDG  V+ KRA+ +ED+  P  H TV ++FVG +K +     LR YF +Y
Sbjct: 71  AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 128

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 30/81 (37%), Positives = 51/81 (62%)
 Frame = +2

Query: 44  KKLFIGGLHLKTTEESLKGFYSQWGEIVDVVVMRDPQTGKSRGFGFVTYSDASSVDDAQG 223
           KK+F+GG+   T E  L+ ++ Q+G+I  + +M D  +GK RGF FVT+ D +SVD    
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVI 164

Query: 224 NRPHEVDGIKVDSKRAMPKED 286
            + H V+G   + ++A+ K++
Sbjct: 165 QKYHTVNGHNCEVRKALSKQE 185
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,121,443
Number of Sequences: 369166
Number of extensions: 1520048
Number of successful extensions: 5009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4906
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)