Planaria EST Database


DrC_01318

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01318
         (461 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P45093|GMHA_HAEIN  Phosphoheptose isomerase (Sedoheptulos...    32   0.90 
sp|P57814|GMHA_PASMU  Phosphoheptose isomerase (Sedoheptulos...    32   0.90 
sp|P47136|BUD4_YEAST  Bud site selection protein BUD4              31   1.5  
sp|Q73IE4|CLPB_WOLPM  Chaperone clpB                               29   4.5  
sp|P24063|ITAL_MOUSE  Integrin alpha-L precursor (Leukocyte ...    29   5.8  
sp|Q9ES07|S15A2_MOUSE  Oligopeptide transporter, kidney isof...    29   5.8  
sp|P54758|EPHA6_RAT  Ephrin type-A receptor 6 precursor (Tyr...    28   9.9  
sp|Q92I11|RECR_RICCN  Recombination protein recR                   28   9.9  
>sp|P45093|GMHA_HAEIN Phosphoheptose isomerase (Sedoheptulose 7-phosphate isomerase)
          Length = 194

 Score = 31.6 bits (70), Expect = 0.90
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   NNIKMVDDQELSITDLQKQQGSWIVHCGNVYQKCDMLEF 118
           NNIK++ +  L I++  KQ G  ++ CGN    CD + F
Sbjct: 25  NNIKLIQEAALLISNSFKQGGK-VLSCGNGGSHCDAMHF 62
>sp|P57814|GMHA_PASMU Phosphoheptose isomerase (Sedoheptulose 7-phosphate isomerase)
          Length = 194

 Score = 31.6 bits (70), Expect = 0.90
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 2   NNIKMVDDQELSITDLQKQQGSWIVHCGNVYQKCDMLEF 118
           NN+K++    L I+D  KQ G  ++ CGN    CD + F
Sbjct: 25  NNMKLIQQAALLISDSFKQGGK-VLSCGNGGSHCDAMHF 62
>sp|P47136|BUD4_YEAST Bud site selection protein BUD4
          Length = 1447

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 222  IQWCFIERDIMLKQVEKSICYLGKMLSKKKIQKNL 326
            ++ CF+ER    +Q  K    + K++SK K+Q+N+
Sbjct: 1269 VEACFLERTSAFEQFPKQFSLVNKIVSKYKLQQNI 1303
>sp|Q73IE4|CLPB_WOLPM Chaperone clpB
          Length = 853

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 198 FLNLFMEIIQWCFIERDIMLKQVEKSICYLGKMLSKKKIQKNL 326
           FLN   EII +  + RD + K ++    YL K L+K+K+  +L
Sbjct: 748 FLNRLDEIIIFHSLTRDDIYKIIDVQFSYLQKTLAKRKLSISL 790
>sp|P24063|ITAL_MOUSE Integrin alpha-L precursor (Leukocyte adhesion glycoprotein LFA-1
           alpha chain) (LFA-1A) (Leukocyte function associated
           molecule 1, alpha chain) (CD11a)
          Length = 1163

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 194 LFPQFIHGNYPVVFHRAGHNVKASGKINLLLGKDAFQKKDSKEFIRI 334
           LFPQ + G  P++ +R  +     GK++L+   D  Q  D K+F +I
Sbjct: 128 LFPQSLEG--PMLQNRPAYQECMKGKVDLVFLFDGSQSLDRKDFEKI 172
>sp|Q9ES07|S15A2_MOUSE Oligopeptide transporter, kidney isoform (Peptide transporter 2)
           (Kidney H(+)/peptide cotransporter) (Solute carrier
           family 15 member 2)
          Length = 729

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 443 FIKIKLETKEQ-LHTHLNIHHLNYFSVFSILNCNKYE 336
           + K++LETK Q LH HL  ++L+  + +S+   N Y+
Sbjct: 452 YSKLRLETKSQDLHFHLKYNNLSVHNEYSVEEKNCYQ 488
>sp|P54758|EPHA6_RAT Ephrin type-A receptor 6 precursor (Tyrosine-protein kinase
           receptor EHK-2) (EPH homology kinase 2)
          Length = 948

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -1

Query: 443 FIKIKLETKEQLHTHLNIHHLNYFSVFSILNCNKYE 336
           +IK K++++E+  THL   HL +  + + ++ + YE
Sbjct: 577 YIKAKMKSEEKRRTHLQNSHLRFPGIKTYIDPDTYE 612
>sp|Q92I11|RECR_RICCN Recombination protein recR
          Length = 201

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/59 (18%), Positives = 29/59 (49%)
 Frame = +2

Query: 101 CDMLEFDSLSNLFTNSFNKHSLXXXXXXXXKLFPQFIHGNYPVVFHRAGHNVKASGKIN 277
           C  ++ +++  + ++ +   S+        +L+     GN+  ++H  GHN+ A+ + N
Sbjct: 62  CGNMDTENMCRICSSEYRDKSIIAIVETVAELWAMERSGNFKGLYHVLGHNLSATSRQN 120
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,224,707
Number of Sequences: 369166
Number of extensions: 770738
Number of successful extensions: 1796
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)