Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_F02
(461 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P45093|GMHA_HAEIN Phosphoheptose isomerase (Sedoheptulos... 32 0.90
sp|P57814|GMHA_PASMU Phosphoheptose isomerase (Sedoheptulos... 32 0.90
sp|P47136|BUD4_YEAST Bud site selection protein BUD4 31 1.5
sp|Q73IE4|CLPB_WOLPM Chaperone clpB 29 4.5
sp|P24063|ITAL_MOUSE Integrin alpha-L precursor (Leukocyte ... 29 5.8
sp|Q9ES07|S15A2_MOUSE Oligopeptide transporter, kidney isof... 29 5.8
sp|P54758|EPHA6_RAT Ephrin type-A receptor 6 precursor (Tyr... 28 9.9
sp|Q92I11|RECR_RICCN Recombination protein recR 28 9.9
>sp|P45093|GMHA_HAEIN Phosphoheptose isomerase (Sedoheptulose 7-phosphate isomerase)
Length = 194
Score = 31.6 bits (70), Expect = 0.90
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 2 NNIKMVDDQELSITDLQKQQGSWIVHCGNVYQKCDMLEF 118
NNIK++ + L I++ KQ G ++ CGN CD + F
Sbjct: 25 NNIKLIQEAALLISNSFKQGGK-VLSCGNGGSHCDAMHF 62
>sp|P57814|GMHA_PASMU Phosphoheptose isomerase (Sedoheptulose 7-phosphate isomerase)
Length = 194
Score = 31.6 bits (70), Expect = 0.90
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 2 NNIKMVDDQELSITDLQKQQGSWIVHCGNVYQKCDMLEF 118
NN+K++ L I+D KQ G ++ CGN CD + F
Sbjct: 25 NNMKLIQQAALLISDSFKQGGK-VLSCGNGGSHCDAMHF 62
>sp|P47136|BUD4_YEAST Bud site selection protein BUD4
Length = 1447
Score = 30.8 bits (68), Expect = 1.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 222 IQWCFIERDIMLKQVEKSICYLGKMLSKKKIQKNL 326
++ CF+ER +Q K + K++SK K+Q+N+
Sbjct: 1269 VEACFLERTSAFEQFPKQFSLVNKIVSKYKLQQNI 1303
>sp|Q73IE4|CLPB_WOLPM Chaperone clpB
Length = 853
Score = 29.3 bits (64), Expect = 4.5
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 198 FLNLFMEIIQWCFIERDIMLKQVEKSICYLGKMLSKKKIQKNL 326
FLN EII + + RD + K ++ YL K L+K+K+ +L
Sbjct: 748 FLNRLDEIIIFHSLTRDDIYKIIDVQFSYLQKTLAKRKLSISL 790
>sp|P24063|ITAL_MOUSE Integrin alpha-L precursor (Leukocyte adhesion glycoprotein LFA-1
alpha chain) (LFA-1A) (Leukocyte function associated
molecule 1, alpha chain) (CD11a)
Length = 1163
Score = 28.9 bits (63), Expect = 5.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 194 LFPQFIHGNYPVVFHRAGHNVKASGKINLLLGKDAFQKKDSKEFIRI 334
LFPQ + G P++ +R + GK++L+ D Q D K+F +I
Sbjct: 128 LFPQSLEG--PMLQNRPAYQECMKGKVDLVFLFDGSQSLDRKDFEKI 172
>sp|Q9ES07|S15A2_MOUSE Oligopeptide transporter, kidney isoform (Peptide transporter 2)
(Kidney H(+)/peptide cotransporter) (Solute carrier
family 15 member 2)
Length = 729
Score = 28.9 bits (63), Expect = 5.8
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -1
Query: 443 FIKIKLETKEQ-LHTHLNIHHLNYFSVFSILNCNKYE 336
+ K++LETK Q LH HL ++L+ + +S+ N Y+
Sbjct: 452 YSKLRLETKSQDLHFHLKYNNLSVHNEYSVEEKNCYQ 488
>sp|P54758|EPHA6_RAT Ephrin type-A receptor 6 precursor (Tyrosine-protein kinase
receptor EHK-2) (EPH homology kinase 2)
Length = 948
Score = 28.1 bits (61), Expect = 9.9
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -1
Query: 443 FIKIKLETKEQLHTHLNIHHLNYFSVFSILNCNKYE 336
+IK K++++E+ THL HL + + + ++ + YE
Sbjct: 577 YIKAKMKSEEKRRTHLQNSHLRFPGIKTYIDPDTYE 612
>sp|Q92I11|RECR_RICCN Recombination protein recR
Length = 201
Score = 28.1 bits (61), Expect = 9.9
Identities = 11/59 (18%), Positives = 29/59 (49%)
Frame = +2
Query: 101 CDMLEFDSLSNLFTNSFNKHSLXXXXXXXXKLFPQFIHGNYPVVFHRAGHNVKASGKIN 277
C ++ +++ + ++ + S+ +L+ GN+ ++H GHN+ A+ + N
Sbjct: 62 CGNMDTENMCRICSSEYRDKSIIAIVETVAELWAMERSGNFKGLYHVLGHNLSATSRQN 120
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,224,707
Number of Sequences: 369166
Number of extensions: 770738
Number of successful extensions: 1796
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)