Planaria EST Database


DrC_01314

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01314
         (651 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35749|MYH11_HUMAN  Myosin-11 (Myosin heavy chain, smooth...    40   0.007
sp|Q15696|U2AFM_HUMAN  U2 small nuclear ribonucleoprotein au...    34   0.29 
sp|Q15695|U2AFL_HUMAN  U2 small nuclear ribonucleoprotein au...    33   0.84 
sp|Q62377|U2AFM_MOUSE  U2 small nuclear ribonucleoprotein au...    32   1.1  
sp|Q64707|U2AFL_MOUSE  U2 small nuclear ribonucleoprotein au...    31   2.4  
sp|P21192|ACE2_YEAST  Metallothionein expression activator         31   3.2  
sp|O44952|LONM_CAEEL  Lon protease homolog, mitochondrial pr...    30   4.2  
sp|Q8MIT6|ROCK1_BOVIN  Rho-associated protein kinase 1 (Rho-...    30   4.2  
sp|Q9PLL9|TIG_CHLMU  Trigger factor (TF)                           30   4.2  
sp|P39922|MYS3_HYDAT  Myosin heavy chain, clone 203                30   5.4  
>sp|P35749|MYH11_HUMAN Myosin-11 (Myosin heavy chain, smooth muscle isoform) (SMMHC)
          Length = 1972

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 40/197 (20%), Positives = 79/197 (40%), Gaps = 6/197 (3%)
 Frame = +1

Query: 76   ENEKQILNEQLQLTIEEKSIEEQKRTYLEEKHSEAQKMLSQAEDKITSXXXXXXXXXXXX 255
            E E Q   ++LQ T E +   E +   LE+KHS+  +  +  ++++ +            
Sbjct: 851  EEEMQAKEDELQKTKERQQKAENELKELEQKHSQLTEEKNLLQEQLQAETELYAEAEEMR 910

Query: 256  XXXXXXXXXXXTIRNATMALLEEEQLAKVQLE---KLLEQQNDTLHTEMQKSQNFAEALS 426
                        I +   A LEEE+    QL+   K + QQ   L  ++++ +   + L 
Sbjct: 911  VRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQ 970

Query: 427  AEKLRISXXXXXXXXXXXXXXDSQKKMQKSGIRVKNLDSKVSRIAENVFGKED---NRIP 597
             EK+                 D   K+ K     K L+ ++S +  N+  +E+   N   
Sbjct: 971  LEKVTAEAKIKKLEDEILVMDDQNNKLSKER---KLLEERISDLTTNLAEEEEKAKNLTK 1027

Query: 598  VSHRGQGFIAEVMVEAR 648
            + ++ +  I+E+ V  +
Sbjct: 1028 LKNKHESMISELEVRLK 1044

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 14/180 (7%)
 Frame = +1

Query: 73   IENEKQILNEQLQLTIEEKSIEEQKRTYLEEKHSEAQK-------MLSQAEDKITSXXXX 231
            +E++K+ L  Q+Q    + S  E+ R  L +K  + Q        ML++AE K       
Sbjct: 1250 VEHKKKKLEAQVQELQSKCSDGERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKD 1309

Query: 232  XXXXXXXXXXXXXXXXXXXTIRNATMALLEEEQLAKV----QLEKLLEQQN---DTLHTE 390
                                    T  LL+EE   K+    +L +L E++N   D L  E
Sbjct: 1310 VASLSSQLQD--------------TQELLQEETRQKLNVSTKLRQLEEERNSLQDQLDEE 1355

Query: 391  MQKSQNFAEALSAEKLRISXXXXXXXXXXXXXXDSQKKMQKSGIRVKNLDSKVSRIAENV 570
            M+  QN    +S   +++S              DS+KK+Q     V+ L+    R  + +
Sbjct: 1356 MEAKQNLERHISTLNIQLS--------------DSKKKLQDFASTVEALEEGKKRFQKEI 1401
>sp|Q15696|U2AFM_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit
           related-protein 2 (U2(RNU2) small nuclear RNA auxillary
           factor 1-like 2)
          Length = 482

 Score = 34.3 bits (77), Expect = 0.29
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +1

Query: 76  ENEKQILNEQLQLTIEEKSIEEQKRTYLEEKHSEAQKMLSQAEDKI 213
           E E+++  +  +   +E+  EEQKR   +EK    QKML QAE+++
Sbjct: 102 EQERKLKEQWEEQQRKEREEEEQKRQEKKEKEEALQKMLDQAENEL 147
>sp|Q15695|U2AFL_HUMAN U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit
           related-protein 1 (U2(RNU2) small nuclear RNA auxillary
           factor 1-like 1)
          Length = 479

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +1

Query: 76  ENEKQILNEQLQLTIEEKSIEEQKRTYLEEKHSEAQKMLSQAEDKI 213
           E E+++  +  +   +E+  EEQK+   +EK    QKML QAE+ +
Sbjct: 107 EQERKLKEQWKEQQRKEREEEEQKQQEKKEKEEAVQKMLDQAENDL 152
>sp|Q62377|U2AFM_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit
           related-protein 2 (U2(RNU2) small nuclear RNA auxillary
           factor 1-like 2)
          Length = 462

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 76  ENEKQILNEQLQLTIEEKSIEEQKRTYLEEKHSEAQKMLSQAEDKI 213
           E E+++  E  +   +E+  EEQKR    E+    QKML QAE+++
Sbjct: 106 ELERKLKAEWEEQQRKEREEEEQKRQEKREREEAVQKMLDQAENEL 151
>sp|Q64707|U2AFL_MOUSE U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit
           related-protein 1 (U2(RNU2) small nuclear RNA auxillary
           factor 1-like 1) (SP2)
          Length = 428

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 76  ENEKQILNEQLQLTIEEKSIEEQKRTYLEEKHSEAQKMLSQAEDK 210
           E E+QI  E  +   +++  EEQK     E+    QKML QAE++
Sbjct: 98  EQERQIKAEWEEQQKKQREEEEQKLQEKREREEAVQKMLDQAENE 142
>sp|P21192|ACE2_YEAST Metallothionein expression activator
          Length = 770

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
 Frame = +1

Query: 73  IENEKQILNEQLQLTIEEKSIEEQK-RTYLEEKHSEAQKMLSQA 201
           +E +K++ NE+L+  + +  I+++K R  LEE+   AQK++S A
Sbjct: 202 LEKQKEV-NEKLEKQLRDNQIQQEKLRKVLEEQEEVAQKLVSGA 244
>sp|O44952|LONM_CAEEL Lon protease homolog, mitochondrial precursor
          Length = 971

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +1

Query: 79  NEKQILNEQLQLTIEEKSIEEQKRTYLEEKHSEAQKMLSQAE 204
           + K +LNEQL++  +E  IE+ ++T + EK  E  K L+  E
Sbjct: 380 HRKYLLNEQLKVIKKELGIEKDEKTTIIEKIDERIKTLAVPE 421
>sp|Q8MIT6|ROCK1_BOVIN Rho-associated protein kinase 1 (Rho-associated, coiled-coil
           containing protein kinase 1) (p160 ROCK-1) (p160ROCK)
          Length = 441

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 29/124 (23%), Positives = 54/124 (43%)
 Frame = +1

Query: 73  IENEKQILNEQLQLTIEEKSIEEQKRTYLEEKHSEAQKMLSQAEDKITSXXXXXXXXXXX 252
           +++EK+ L  QL L   +   E+  R  LEE++ E    L+Q   K  S           
Sbjct: 288 LQSEKETLATQLDLAETKAESEQLARGLLEEQYFE----LTQESKKAAS----------- 332

Query: 253 XXXXXXXXXXXXTIRNATMALLEEEQLAKVQLEKLLEQQNDTLHTEMQKSQNFAEALSAE 432
                       T ++ T++ LEE      +  +LL ++N+ L  +M+K++   +    E
Sbjct: 333 ------RNRQEITDKDHTLSRLEETNSMLTKDIELLRKENEELTDKMRKAEEEYKLKKEE 386

Query: 433 KLRI 444
           ++ I
Sbjct: 387 EINI 390
>sp|Q9PLL9|TIG_CHLMU Trigger factor (TF)
          Length = 433

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +1

Query: 73  IENEKQILNEQLQLTIEEKSIEEQKRTYLEEKHSEAQK 186
           I + +++LN +L     +  +EEQK+T LEE  ++A+K
Sbjct: 315 ILSREKLLNARLVKYCSDSELEEQKQTLLEEAKADARK 352
>sp|P39922|MYS3_HYDAT Myosin heavy chain, clone 203
          Length = 539

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = +1

Query: 298 NATMALLEEEQLAKVQLEKLLEQQNDTLHTEMQKSQNFAEALSAEK 435
           NAT+A ++EE  A  + +  LE++   L+ E+ +++N  + +  +K
Sbjct: 400 NATIAEIQEENEAMKKAKAKLEKEKSALNNELNETKNSLDQIKKQK 445
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.307    0.123    0.305 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,465,127
Number of Sequences: 369166
Number of extensions: 679522
Number of successful extensions: 2370
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2356
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)