Planaria EST Database


DrC_01309

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01309
         (890 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O51040|Y007_BORBU  Hypothetical protein BB0007                  36   0.16 
sp|P75678|YKFA_ECOLI  Hypothetical protein ykfA                    34   0.48 
sp|Q01550|TANA_XENLA  Tanabin                                      33   0.82 
sp|P52131|YFJP_ECOLI  Hypothetical protein yfjP                    33   1.4  
sp|P46344|YQFF_BACSU  Hypothetical protein yqfF                    32   2.4  
sp|Q58760|YD65_METJA  Hypothetical protein MJ1365                  32   2.4  
sp|Q89YY3|CLPB_BACTN  Chaperone clpB                               32   3.1  
sp|Q9ZB21|UVB2_MYCPU  UvrABC system protein B (UvrB protein)...    31   5.3  
sp|P19580|CAPB_BACAN  Capsule biosynthesis protein capB            30   6.9  
sp|P75471|HMW2_MYCPN  Cytadherence high molecular weight pro...    30   6.9  
>sp|O51040|Y007_BORBU Hypothetical protein BB0007
          Length = 285

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 29/130 (22%), Positives = 56/130 (43%)
 Frame = +2

Query: 32  LKYSYNTLAINIINTPKIFSKTFLEYIKKLEFSSLDNKEDLLDESVNDILNSVNSSISEE 211
           L+Y Y     NII+   I+   FL Y+++  F SLDN+               N      
Sbjct: 45  LEYVYKQNGYNIISNEMIYLSHFLTYVREGFFESLDNRA------------LFNLGAKLR 92

Query: 212 FLKTHDYLLESVIIRDNEMNNVTRQPKVVVRAAGHVSGQVRYYQRLDIPTNLDPWGSHEK 391
           F +    L + +   + ++ N   Q K+ + ++G        ++++ + + + P+ S  K
Sbjct: 93  FFEGVIGLFDEISEINKKLENSKSQIKIYIVSSG--------FRQMILGSKIAPYVS--K 142

Query: 392 IFGCSFHDKY 421
           ++ C F D Y
Sbjct: 143 VWACEFIDSY 152
>sp|P75678|YKFA_ECOLI Hypothetical protein ykfA
          Length = 287

 Score = 34.3 bits (77), Expect = 0.48
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
 Frame = -2

Query: 769 PIEQFCAIAQLVDAELIVMVTAIVKCL--QNVPPLLHQLQSLF----TRWQTQKRFERTA 608
           P+   CA++  +   L VM   ++KCL  +   P++ QL   F     R Q +  F  T 
Sbjct: 188 PVHPVCAVSVRLQWGLKVMAERMIKCLpreATSPVVSQLHPSFRTTVVREQARSDFGETV 247

Query: 607 IALVHINKISEFPSFPVEIEFCKQLNNRVYITEQRIWW 494
            A+  ++ IS FP  P  +    Q      ++  R  W
Sbjct: 248 GAV--LDSISAFPLIPAPVRAVIQAVRTTVVSVARAVW 283
>sp|Q01550|TANA_XENLA Tanabin
          Length = 1744

 Score = 33.5 bits (75), Expect = 0.82
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
 Frame = +2

Query: 116  KLEFSSLDNKEDLLDESVNDILNSVNSSISEEFLKTHDYLLESVI-------IRDNEMNN 274
            K E S ++N+    +ESV+    S+NS  SEEF  + DY LE  +         ++E  +
Sbjct: 1359 KPEDSKMENENSESEESVDSQEISLNSHKSEEFEISKDYQLEQTLPDVTPLPNLEDEFED 1418

Query: 275  VTRQPKV 295
            +T QP V
Sbjct: 1419 LTEQPDV 1425
>sp|P52131|YFJP_ECOLI Hypothetical protein yfjP
          Length = 287

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
 Frame = -2

Query: 769 PIEQFCAIAQLVDAELIVMVTAIVKCLQN------VPPLLHQLQSLFTRWQTQKRFERTA 608
           P+   CA++  +   L VM   ++KCL        V  L H  ++   R Q +  F  T 
Sbjct: 188 PVHPVCAVSVRLQWGLRVMAERMIKCLpreASSPVVALLQHPFRTTVAREQARDDFGETV 247

Query: 607 IALVHINKISEFPSFPVEIEFCKQLNNRVYITEQRIWW 494
            A+  ++ +S FP  P  +    Q      ++  R  W
Sbjct: 248 GAI--LDTVSTFPLIPAPVRTIIQAVRSSVVSVARAVW 283
>sp|P46344|YQFF_BACSU Hypothetical protein yqfF
          Length = 711

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +2

Query: 8   DKISENFQLKYSYNTLAINIINTPKIFSKTFLEYIKKLEFSSLDNKEDLLDESVNDILNS 187
           D + + + LK  Y    I+++++  IF  +  E  K  E  S    E  + +SV D L S
Sbjct: 82  DAVEDQYTLKKEYTDNRIDLVSS--IFD-SISEVKKSSEEGSKSPSEKSMVKSVKDKLTS 138

Query: 188 -VNSSISEEFLKT 223
            VN SISE+ +KT
Sbjct: 139 DVNDSISEDSIKT 151
>sp|Q58760|YD65_METJA Hypothetical protein MJ1365
          Length = 397

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
 Frame = +2

Query: 92  KTFLEYIKKLEFSSLDNKEDLLDESVND------ILNSVNSSISEEFLKTHDYLLESVII 253
           K F E +   E   L+  +DLL++ V +      +L  ++ +I E  +   D  +   + 
Sbjct: 145 KIFWELLNSDE-EDLELDDDLLNDMVKNPEKFIKLLKEISPTIYEVLVDERDRFMAKRLF 203

Query: 254 RDNEMNNVTRQPKVVVRAAGHVSGQVRYYQRLDIPTNLD 370
             ++  N      V V  AGHV G VRY ++L+   ++D
Sbjct: 204 ELSKNKNSL----VAVVGAGHVEGIVRYLKKLENGNDID 238
>sp|Q89YY3|CLPB_BACTN Chaperone clpB
          Length = 862

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 18/71 (25%), Positives = 37/71 (52%)
 Frame = +2

Query: 65  IINTPKIFSKTFLEYIKKLEFSSLDNKEDLLDESVNDILNSVNSSISEEFLKTHDYLLES 244
           II T  + S      ++KL  S   NKE++++E+  +++N +  +I  EFL   D  +  
Sbjct: 712 IIMTSNMGSSYIQSQMEKLSGS---NKEEVIEETKKEVMNMLKKNIRPEFLNRIDETIMF 768

Query: 245 VIIRDNEMNNV 277
           + + + E+  +
Sbjct: 769 LPLTETEIRQI 779
>sp|Q9ZB21|UVB2_MYCPU UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
          Length = 660

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 158 DESVNDILNSVNSSISE--EFLKTHDYLLESVIIRDNEMNNVTRQPKVVVRAAGHVSGQV 331
           + ++ + ++ +   +SE  E+ K+HD LLE+  I+D  +N++       +   G+ SG  
Sbjct: 253 ENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDS-----LLEFGYTSGIE 307

Query: 332 RYYQRLD 352
            Y + LD
Sbjct: 308 NYSRYLD 314
>sp|P19580|CAPB_BACAN Capsule biosynthesis protein capB
          Length = 464

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +2

Query: 107 YIKKLEFSSLDNKEDLLDESVNDILNSVNSSISEEFLKTHDYLL 238
           ++  +E   LD  +++ +E    ++ + NS ISEEFL+  DY++
Sbjct: 234 HLVTIESEYLDYFKEVAEERNTKVIVADNSRISEEFLRKFDYMV 277
>sp|P75471|HMW2_MYCPN Cytadherence high molecular weight protein 2 (Cytadherence
           accessory protein 2)
          Length = 1818

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
 Frame = +2

Query: 2   YNDKISENFQLKYSYNTLAINIINTPKIFSKTFLEYIKKLEFSSLDNKEDLLDES----- 166
           Y D +S + +L+  Y T+A N  N  K     +   +K++E      K++L+DE      
Sbjct: 227 YQDLVSADAELQNVYETIAQNQANFQK-QCDAYWAQLKQVEQQIQTTKQELVDEESTLKV 285

Query: 167 -VNDILNSVNSSISEEFLKTHDYLLESVIIRDNEMNNVTRQPKVVVRAA 310
            +ND    +NS ++E         L+ +  + NE + V+++    V+A+
Sbjct: 286 RLNDADFYINSRLAE---------LDDLTSKINERDFVSKEQAQDVKAS 325
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,446,412
Number of Sequences: 369166
Number of extensions: 1956993
Number of successful extensions: 5228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5227
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)