Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_D11
(890 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O51040|Y007_BORBU Hypothetical protein BB0007 36 0.16
sp|P75678|YKFA_ECOLI Hypothetical protein ykfA 34 0.48
sp|Q01550|TANA_XENLA Tanabin 33 0.82
sp|P52131|YFJP_ECOLI Hypothetical protein yfjP 33 1.4
sp|P46344|YQFF_BACSU Hypothetical protein yqfF 32 2.4
sp|Q58760|YD65_METJA Hypothetical protein MJ1365 32 2.4
sp|Q89YY3|CLPB_BACTN Chaperone clpB 32 3.1
sp|Q9ZB21|UVB2_MYCPU UvrABC system protein B (UvrB protein)... 31 5.3
sp|P19580|CAPB_BACAN Capsule biosynthesis protein capB 30 6.9
sp|P75471|HMW2_MYCPN Cytadherence high molecular weight pro... 30 6.9
>sp|O51040|Y007_BORBU Hypothetical protein BB0007
Length = 285
Score = 35.8 bits (81), Expect = 0.16
Identities = 29/130 (22%), Positives = 56/130 (43%)
Frame = +2
Query: 32 LKYSYNTLAINIINTPKIFSKTFLEYIKKLEFSSLDNKEDLLDESVNDILNSVNSSISEE 211
L+Y Y NII+ I+ FL Y+++ F SLDN+ N
Sbjct: 45 LEYVYKQNGYNIISNEMIYLSHFLTYVREGFFESLDNRA------------LFNLGAKLR 92
Query: 212 FLKTHDYLLESVIIRDNEMNNVTRQPKVVVRAAGHVSGQVRYYQRLDIPTNLDPWGSHEK 391
F + L + + + ++ N Q K+ + ++G ++++ + + + P+ S K
Sbjct: 93 FFEGVIGLFDEISEINKKLENSKSQIKIYIVSSG--------FRQMILGSKIAPYVS--K 142
Query: 392 IFGCSFHDKY 421
++ C F D Y
Sbjct: 143 VWACEFIDSY 152
>sp|P75678|YKFA_ECOLI Hypothetical protein ykfA
Length = 287
Score = 34.3 bits (77), Expect = 0.48
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Frame = -2
Query: 769 PIEQFCAIAQLVDAELIVMVTAIVKCL--QNVPPLLHQLQSLF----TRWQTQKRFERTA 608
P+ CA++ + L VM ++KCL + P++ QL F R Q + F T
Sbjct: 188 PVHPVCAVSVRLQWGLKVMAERMIKCLpreATSPVVSQLHPSFRTTVVREQARSDFGETV 247
Query: 607 IALVHINKISEFPSFPVEIEFCKQLNNRVYITEQRIWW 494
A+ ++ IS FP P + Q ++ R W
Sbjct: 248 GAV--LDSISAFPLIPAPVRAVIQAVRTTVVSVARAVW 283
>sp|Q01550|TANA_XENLA Tanabin
Length = 1744
Score = 33.5 bits (75), Expect = 0.82
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Frame = +2
Query: 116 KLEFSSLDNKEDLLDESVNDILNSVNSSISEEFLKTHDYLLESVI-------IRDNEMNN 274
K E S ++N+ +ESV+ S+NS SEEF + DY LE + ++E +
Sbjct: 1359 KPEDSKMENENSESEESVDSQEISLNSHKSEEFEISKDYQLEQTLPDVTPLPNLEDEFED 1418
Query: 275 VTRQPKV 295
+T QP V
Sbjct: 1419 LTEQPDV 1425
>sp|P52131|YFJP_ECOLI Hypothetical protein yfjP
Length = 287
Score = 32.7 bits (73), Expect = 1.4
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Frame = -2
Query: 769 PIEQFCAIAQLVDAELIVMVTAIVKCLQN------VPPLLHQLQSLFTRWQTQKRFERTA 608
P+ CA++ + L VM ++KCL V L H ++ R Q + F T
Sbjct: 188 PVHPVCAVSVRLQWGLRVMAERMIKCLpreASSPVVALLQHPFRTTVAREQARDDFGETV 247
Query: 607 IALVHINKISEFPSFPVEIEFCKQLNNRVYITEQRIWW 494
A+ ++ +S FP P + Q ++ R W
Sbjct: 248 GAI--LDTVSTFPLIPAPVRTIIQAVRSSVVSVARAVW 283
>sp|P46344|YQFF_BACSU Hypothetical protein yqfF
Length = 711
Score = 32.0 bits (71), Expect = 2.4
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +2
Query: 8 DKISENFQLKYSYNTLAINIINTPKIFSKTFLEYIKKLEFSSLDNKEDLLDESVNDILNS 187
D + + + LK Y I+++++ IF + E K E S E + +SV D L S
Sbjct: 82 DAVEDQYTLKKEYTDNRIDLVSS--IFD-SISEVKKSSEEGSKSPSEKSMVKSVKDKLTS 138
Query: 188 -VNSSISEEFLKT 223
VN SISE+ +KT
Sbjct: 139 DVNDSISEDSIKT 151
>sp|Q58760|YD65_METJA Hypothetical protein MJ1365
Length = 397
Score = 32.0 bits (71), Expect = 2.4
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +2
Query: 92 KTFLEYIKKLEFSSLDNKEDLLDESVND------ILNSVNSSISEEFLKTHDYLLESVII 253
K F E + E L+ +DLL++ V + +L ++ +I E + D + +
Sbjct: 145 KIFWELLNSDE-EDLELDDDLLNDMVKNPEKFIKLLKEISPTIYEVLVDERDRFMAKRLF 203
Query: 254 RDNEMNNVTRQPKVVVRAAGHVSGQVRYYQRLDIPTNLD 370
++ N V V AGHV G VRY ++L+ ++D
Sbjct: 204 ELSKNKNSL----VAVVGAGHVEGIVRYLKKLENGNDID 238
>sp|Q89YY3|CLPB_BACTN Chaperone clpB
Length = 862
Score = 31.6 bits (70), Expect = 3.1
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = +2
Query: 65 IINTPKIFSKTFLEYIKKLEFSSLDNKEDLLDESVNDILNSVNSSISEEFLKTHDYLLES 244
II T + S ++KL S NKE++++E+ +++N + +I EFL D +
Sbjct: 712 IIMTSNMGSSYIQSQMEKLSGS---NKEEVIEETKKEVMNMLKKNIRPEFLNRIDETIMF 768
Query: 245 VIIRDNEMNNV 277
+ + + E+ +
Sbjct: 769 LPLTETEIRQI 779
>sp|Q9ZB21|UVB2_MYCPU UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
Length = 660
Score = 30.8 bits (68), Expect = 5.3
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 158 DESVNDILNSVNSSISE--EFLKTHDYLLESVIIRDNEMNNVTRQPKVVVRAAGHVSGQV 331
+ ++ + ++ + +SE E+ K+HD LLE+ I+D +N++ + G+ SG
Sbjct: 253 ENTIQNTVDLIKQELSERIEYFKSHDKLLEAQRIKDRTLNDLDS-----LLEFGYTSGIE 307
Query: 332 RYYQRLD 352
Y + LD
Sbjct: 308 NYSRYLD 314
>sp|P19580|CAPB_BACAN Capsule biosynthesis protein capB
Length = 464
Score = 30.4 bits (67), Expect = 6.9
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 107 YIKKLEFSSLDNKEDLLDESVNDILNSVNSSISEEFLKTHDYLL 238
++ +E LD +++ +E ++ + NS ISEEFL+ DY++
Sbjct: 234 HLVTIESEYLDYFKEVAEERNTKVIVADNSRISEEFLRKFDYMV 277
>sp|P75471|HMW2_MYCPN Cytadherence high molecular weight protein 2 (Cytadherence
accessory protein 2)
Length = 1818
Score = 30.4 bits (67), Expect = 6.9
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Frame = +2
Query: 2 YNDKISENFQLKYSYNTLAINIINTPKIFSKTFLEYIKKLEFSSLDNKEDLLDES----- 166
Y D +S + +L+ Y T+A N N K + +K++E K++L+DE
Sbjct: 227 YQDLVSADAELQNVYETIAQNQANFQK-QCDAYWAQLKQVEQQIQTTKQELVDEESTLKV 285
Query: 167 -VNDILNSVNSSISEEFLKTHDYLLESVIIRDNEMNNVTRQPKVVVRAA 310
+ND +NS ++E L+ + + NE + V+++ V+A+
Sbjct: 286 RLNDADFYINSRLAE---------LDDLTSKINERDFVSKEQAQDVKAS 325
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,446,412
Number of Sequences: 369166
Number of extensions: 1956993
Number of successful extensions: 5228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5227
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8934348180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)