Planaria EST Database


DrC_01304

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01304
         (751 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9R1K7|TBD_MOUSE  Tubulin delta chain (Delta tubulin)           34   0.37 
sp|Q9UJT1|TBD_HUMAN  Tubulin delta chain (Delta tubulin)           33   0.63 
sp|Q7RQ71|MYOA_PLAYO  Myosin A                                     33   1.1  
sp|Q8HZV4|TBD_CANFA  Tubulin delta chain (Delta tubulin)           32   2.4  
sp|Q9UAR6|MYOA_PLAFB  Myosin A (PfM-A) >gi|60392821|sp|Q8IDR...    32   2.4  
sp|Q92268|TBB_PLESA  Tubulin beta chain (Beta tubulin)             32   2.4  
sp|Q9JFC1|VG09_VACCT  Protein G9                                   31   3.1  
sp|P32998|VG09_VARV  Protein G9                                    31   3.1  
sp|P07611|VG09_VACCV  Protein G9 (Protein F1) >gi|137910|sp|...    31   3.1  
sp|Q6EVK8|TBB1_SUIBO  Tubulin beta-1 chain (Beta-1 tubulin)        31   3.1  
>sp|Q9R1K7|TBD_MOUSE Tubulin delta chain (Delta tubulin)
          Length = 455

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 440 EAIDIWMDVNSYDN--KQITLAFNSACIVNYLKYIKLKSLEKFQASAYLHWYYKFG 601
           +A  +W    ++D   K   L  NS  +V  L  I  K+   F + A++H Y KFG
Sbjct: 375 DAFSVWKTQRAFDKYEKSAALVSNSQLLVKPLDMIVGKAWNMFSSKAFIHQYTKFG 430
>sp|Q9UJT1|TBD_HUMAN Tubulin delta chain (Delta tubulin)
          Length = 453

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +2

Query: 419 FVKWNKS-EAIDIWMDVNSYDN--KQITLAFNSACIVNYLKYIKLKSLEKFQASAYLHWY 589
           +  W K   A ++W    ++    K   L  NS  +V  L  I  K+   F + AY+H Y
Sbjct: 367 YTSWLKPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVGKAWNMFASKAYIHQY 426

Query: 590 YKFG 601
            KFG
Sbjct: 427 TKFG 430
>sp|Q7RQ71|MYOA_PLAYO Myosin A
          Length = 817

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +3

Query: 525 ILNILN*KVWKNFKLQLIYIGITNLVVAKNYFQKVSKNLKKLFR 656
           +L+I   +V+KN  L+ ++I ITN ++ KN+   V +   KL+R
Sbjct: 467 MLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYR 510
>sp|Q8HZV4|TBD_CANFA Tubulin delta chain (Delta tubulin)
          Length = 453

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 440 EAIDIWMDVNSYDN--KQITLAFNSACIVNYLKYIKLKSLEKFQASAYLHWYYKFG 601
           +A ++W    ++    K   L  NS  ++  L  I  K+   F + AY+H Y KFG
Sbjct: 375 DAFNVWKTQRAFSKYEKSAALVSNSQFLLKPLDTIVGKAWNMFASKAYIHQYTKFG 430
>sp|Q9UAR6|MYOA_PLAFB Myosin A (PfM-A)
 sp|Q8IDR3|MYOA_PLAF7 Myosin A (PfM-A)
          Length = 818

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +3

Query: 525 ILNILN*KVWKNFKLQLIYIGITNLVVAKNYFQKVSKNLKKLFR 656
           +L+I   +V+KN  L+ ++I ITN ++ KN+   V +   KL++
Sbjct: 467 MLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYK 510
>sp|Q92268|TBB_PLESA Tubulin beta chain (Beta tubulin)
          Length = 446

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 389 MQDQLNKR-LNFVKWNKSEAIDIWMDVNSYDNKQ-ITLAFNSACIVNYLKYIKLKSLEKF 562
           MQ+  NK    FV+W  +  +    D+     K  +T   NS  I    K +  +    F
Sbjct: 330 MQNVQNKNSAYFVEWIPNNVLTAQCDIPPRGCKMAVTFLGNSTAIQELFKRVNDQFAAMF 389

Query: 563 QASAYLHWYYKFG 601
           +  A+LHWY + G
Sbjct: 390 KRKAFLHWYTQEG 402
>sp|Q9JFC1|VG09_VACCT Protein G9
          Length = 340

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 662 SNSK*FFQILRNFLKIILCNHQICNTNVNKLKLE 561
           SN+   F + RN+  + LCN   CNT+VN L+++
Sbjct: 249 SNANVNFLLTRNYNNLGLCNIVRCNTSVNNLQMD 282
>sp|P32998|VG09_VARV Protein G9
          Length = 340

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 662 SNSK*FFQILRNFLKIILCNHQICNTNVNKLKLE 561
           SN+   F + RN+  + LCN   CNT+VN L+++
Sbjct: 249 SNANVNFLLTRNYNNLGLCNIVRCNTSVNNLQMD 282
>sp|P07611|VG09_VACCV Protein G9 (Protein F1)
 sp|P21030|VG09_VACCC Protein G9
          Length = 340

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 662 SNSK*FFQILRNFLKIILCNHQICNTNVNKLKLE 561
           SN+   F + RN+  + LCN   CNT+VN L+++
Sbjct: 249 SNANVNFLLTRNYNNLGLCNIVRCNTSVNNLQMD 282
>sp|Q6EVK8|TBB1_SUIBO Tubulin beta-1 chain (Beta-1 tubulin)
          Length = 446

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
 Frame = +2

Query: 389 MQDQLNKR-LNFVKWNKSEAIDIWMDVNSYDNKQ-ITLAFNSACIVNYLKYIKLKSLEKF 562
           MQ+  NK    FV+W  +  +    D+     K  +T   NS  I    K +       F
Sbjct: 330 MQNVQNKNSAYFVEWIPNNVLSAQCDIPPRGVKMAVTFLGNSTAIQELFKRVSDHFTAMF 389

Query: 563 QASAYLHWYYKFG 601
           +  A+LHWY + G
Sbjct: 390 KRKAFLHWYTQEG 402
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,927,580
Number of Sequences: 369166
Number of extensions: 1519342
Number of successful extensions: 3570
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3569
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)