Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_C18
(751 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R1K7|TBD_MOUSE Tubulin delta chain (Delta tubulin) 34 0.37
sp|Q9UJT1|TBD_HUMAN Tubulin delta chain (Delta tubulin) 33 0.63
sp|Q7RQ71|MYOA_PLAYO Myosin A 33 1.1
sp|Q8HZV4|TBD_CANFA Tubulin delta chain (Delta tubulin) 32 2.4
sp|Q9UAR6|MYOA_PLAFB Myosin A (PfM-A) >gi|60392821|sp|Q8IDR... 32 2.4
sp|Q92268|TBB_PLESA Tubulin beta chain (Beta tubulin) 32 2.4
sp|Q9JFC1|VG09_VACCT Protein G9 31 3.1
sp|P32998|VG09_VARV Protein G9 31 3.1
sp|P07611|VG09_VACCV Protein G9 (Protein F1) >gi|137910|sp|... 31 3.1
sp|Q6EVK8|TBB1_SUIBO Tubulin beta-1 chain (Beta-1 tubulin) 31 3.1
>sp|Q9R1K7|TBD_MOUSE Tubulin delta chain (Delta tubulin)
Length = 455
Score = 34.3 bits (77), Expect = 0.37
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 440 EAIDIWMDVNSYDN--KQITLAFNSACIVNYLKYIKLKSLEKFQASAYLHWYYKFG 601
+A +W ++D K L NS +V L I K+ F + A++H Y KFG
Sbjct: 375 DAFSVWKTQRAFDKYEKSAALVSNSQLLVKPLDMIVGKAWNMFSSKAFIHQYTKFG 430
>sp|Q9UJT1|TBD_HUMAN Tubulin delta chain (Delta tubulin)
Length = 453
Score = 33.5 bits (75), Expect = 0.63
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +2
Query: 419 FVKWNKS-EAIDIWMDVNSYDN--KQITLAFNSACIVNYLKYIKLKSLEKFQASAYLHWY 589
+ W K A ++W ++ K L NS +V L I K+ F + AY+H Y
Sbjct: 367 YTSWLKPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVGKAWNMFASKAYIHQY 426
Query: 590 YKFG 601
KFG
Sbjct: 427 TKFG 430
>sp|Q7RQ71|MYOA_PLAYO Myosin A
Length = 817
Score = 32.7 bits (73), Expect = 1.1
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 525 ILNILN*KVWKNFKLQLIYIGITNLVVAKNYFQKVSKNLKKLFR 656
+L+I +V+KN L+ ++I ITN ++ KN+ V + KL+R
Sbjct: 467 MLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYR 510
>sp|Q8HZV4|TBD_CANFA Tubulin delta chain (Delta tubulin)
Length = 453
Score = 31.6 bits (70), Expect = 2.4
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 440 EAIDIWMDVNSYDN--KQITLAFNSACIVNYLKYIKLKSLEKFQASAYLHWYYKFG 601
+A ++W ++ K L NS ++ L I K+ F + AY+H Y KFG
Sbjct: 375 DAFNVWKTQRAFSKYEKSAALVSNSQFLLKPLDTIVGKAWNMFASKAYIHQYTKFG 430
>sp|Q9UAR6|MYOA_PLAFB Myosin A (PfM-A)
sp|Q8IDR3|MYOA_PLAF7 Myosin A (PfM-A)
Length = 818
Score = 31.6 bits (70), Expect = 2.4
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 525 ILNILN*KVWKNFKLQLIYIGITNLVVAKNYFQKVSKNLKKLFR 656
+L+I +V+KN L+ ++I ITN ++ KN+ V + KL++
Sbjct: 467 MLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYK 510
>sp|Q92268|TBB_PLESA Tubulin beta chain (Beta tubulin)
Length = 446
Score = 31.6 bits (70), Expect = 2.4
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 389 MQDQLNKR-LNFVKWNKSEAIDIWMDVNSYDNKQ-ITLAFNSACIVNYLKYIKLKSLEKF 562
MQ+ NK FV+W + + D+ K +T NS I K + + F
Sbjct: 330 MQNVQNKNSAYFVEWIPNNVLTAQCDIPPRGCKMAVTFLGNSTAIQELFKRVNDQFAAMF 389
Query: 563 QASAYLHWYYKFG 601
+ A+LHWY + G
Sbjct: 390 KRKAFLHWYTQEG 402
>sp|Q9JFC1|VG09_VACCT Protein G9
Length = 340
Score = 31.2 bits (69), Expect = 3.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 662 SNSK*FFQILRNFLKIILCNHQICNTNVNKLKLE 561
SN+ F + RN+ + LCN CNT+VN L+++
Sbjct: 249 SNANVNFLLTRNYNNLGLCNIVRCNTSVNNLQMD 282
>sp|P32998|VG09_VARV Protein G9
Length = 340
Score = 31.2 bits (69), Expect = 3.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 662 SNSK*FFQILRNFLKIILCNHQICNTNVNKLKLE 561
SN+ F + RN+ + LCN CNT+VN L+++
Sbjct: 249 SNANVNFLLTRNYNNLGLCNIVRCNTSVNNLQMD 282
>sp|P07611|VG09_VACCV Protein G9 (Protein F1)
sp|P21030|VG09_VACCC Protein G9
Length = 340
Score = 31.2 bits (69), Expect = 3.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 662 SNSK*FFQILRNFLKIILCNHQICNTNVNKLKLE 561
SN+ F + RN+ + LCN CNT+VN L+++
Sbjct: 249 SNANVNFLLTRNYNNLGLCNIVRCNTSVNNLQMD 282
>sp|Q6EVK8|TBB1_SUIBO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 446
Score = 31.2 bits (69), Expect = 3.1
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Frame = +2
Query: 389 MQDQLNKR-LNFVKWNKSEAIDIWMDVNSYDNKQ-ITLAFNSACIVNYLKYIKLKSLEKF 562
MQ+ NK FV+W + + D+ K +T NS I K + F
Sbjct: 330 MQNVQNKNSAYFVEWIPNNVLSAQCDIPPRGVKMAVTFLGNSTAIQELFKRVSDHFTAMF 389
Query: 563 QASAYLHWYYKFG 601
+ A+LHWY + G
Sbjct: 390 KRKAFLHWYTQEG 402
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,927,580
Number of Sequences: 369166
Number of extensions: 1519342
Number of successful extensions: 3570
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3569
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)